标题
Dissecting super-enhancer hierarchy based on chromatin interactions
作者
关键词
-
出版物
Nature Communications
Volume 9, Issue 1, Pages -
出版商
Springer Nature
发表日期
2018-02-27
DOI
10.1038/s41467-018-03279-9
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Multiplexed Engineering and Analysis of Combinatorial Enhancer Activity in Single Cells
- (2017) Shiqi Xie et al. MOLECULAR CELL
- CTCF-Mediated Enhancer-Promoter Interaction Is a Critical Regulator of Cell-to-Cell Variation of Gene Expression
- (2017) Gang Ren et al. MOLECULAR CELL
- Complex multi-enhancer contacts captured by genome architecture mapping
- (2017) Robert A. Beagrie et al. NATURE
- Variant-aware saturating mutagenesis using multiple Cas9 nucleases identifies regulatory elements at trait-associated loci
- (2017) Matthew C Canver et al. NATURE GENETICS
- Is a super-enhancer greater than the sum of its parts?
- (2017) Noah Dukler et al. NATURE GENETICS
- Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries
- (2017) Valentina Boeva et al. NATURE GENETICS
- On the Origin of lncRNAs: Missing Link Found
- (2017) Joaquín M. Espinosa TRENDS IN GENETICS
- Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters
- (2016) Biola M. Javierre et al. CELL
- 3D Chromosome Regulatory Landscape of Human Pluripotent Cells
- (2016) Xiong Ji et al. Cell Stem Cell
- Dynamic Control of Enhancer Repertoires Drives Lineage and Stage-Specific Transcription during Hematopoiesis
- (2016) Jialiang Huang et al. DEVELOPMENTAL CELL
- Enhancers and super-enhancers have an equivalent regulatory role in embryonic stem cells through regulation of single or multiple genes
- (2016) Sakthi D. Moorthy et al. GENOME RESEARCH
- Bivalent Regions of Cytosine Methylation and H3K27 Acetylation Suggest an Active Role for DNA Methylation at Enhancers
- (2016) Jessica Charlet et al. MOLECULAR CELL
- Hierarchy within the mammary STAT5-driven Wap super-enhancer
- (2016) Ha Youn Shin et al. NATURE GENETICS
- Genetic dissection of the α-globin super-enhancer in vivo
- (2016) Deborah Hay et al. NATURE GENETICS
- HiChIP: efficient and sensitive analysis of protein-directed genome architecture
- (2016) Maxwell R Mumbach et al. NATURE METHODS
- Activation of proto-oncogenes by disruption of chromosome neighborhoods
- (2016) D. Hnisz et al. SCIENCE
- Systematic mapping of functional enhancer–promoter connections with CRISPR interference
- (2016) Charles P. Fulco et al. SCIENCE
- A Compendium of Chromatin Contact Maps Reveals Spatially Active Regions in the Human Genome
- (2016) Anthony D. Schmitt et al. Cell Reports
- CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription
- (2015) Zhonghui Tang et al. CELL
- The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements
- (2015) Stefan Schoenfelder et al. GENOME RESEARCH
- CTCF Binding Polarity Determines Chromatin Looping
- (2015) Elzo de Wit et al. MOLECULAR CELL
- Convergence of Developmental and Oncogenic Signaling Pathways at Transcriptional Super-Enhancers
- (2015) Denes Hnisz et al. MOLECULAR CELL
- Chromatin architecture reorganization during stem cell differentiation
- (2015) Jesse R. Dixon et al. NATURE
- Insulator dysfunction and oncogene activation in IDH mutant gliomas
- (2015) William A. Flavahan et al. NATURE
- BCL11A enhancer dissection by Cas9-mediated in situ saturating mutagenesis
- (2015) Matthew C. Canver et al. NATURE
- What are super-enhancers?
- (2015) Sebastian Pott et al. NATURE GENETICS
- CTCF/cohesin-binding sites are frequently mutated in cancer
- (2015) Riku Katainen et al. NATURE GENETICS
- Highly specific epigenome editing by CRISPR-Cas9 repressors for silencing of distal regulatory elements
- (2015) Pratiksha I Thakore et al. NATURE METHODS
- Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes
- (2015) Adrian L. Sanborn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Hi-Corrector: a fast, scalable and memory-efficient package for normalizing large-scale Hi-C data
- (2014) Wenyuan Li et al. BIOINFORMATICS
- Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation
- (2014) Luke A. Gilbert et al. CELL
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- Control of Cell Identity Genes Occurs in Insulated Neighborhoods in Mammalian Chromosomes
- (2014) Jill M. Dowen et al. CELL
- Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts
- (2014) F. Ay et al. GENOME RESEARCH
- Characterization of Genomic Deletion Efficiency Mediated by Clustered Regularly Interspaced Palindromic Repeats (CRISPR)/Cas9 Nuclease System in Mammalian Cells
- (2014) Matthew C. Canver et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Topologically associating domains are stable units of replication-timing regulation
- (2014) Benjamin D. Pope et al. NATURE
- Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
- (2013) Warren A. Whyte et al. CELL
- Super-Enhancers in the Control of Cell Identity and Disease
- (2013) Denes Hnisz et al. CELL
- A high-resolution map of the three-dimensional chromatin interactome in human cells
- (2013) Fulai Jin et al. NATURE
- The Genotype-Tissue Expression (GTEx) project
- (2013) John Lonsdale et al. NATURE GENETICS
- The sequencing bias relaxed characteristics of Hi-C derived data and implications for chromatin 3D modeling
- (2013) Cheng Peng et al. NUCLEIC ACIDS RESEARCH
- The NHGRI GWAS Catalog, a curated resource of SNP-trait associations
- (2013) Danielle Welter et al. NUCLEIC ACIDS RESEARCH
- JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles
- (2013) Anthony Mathelier et al. NUCLEIC ACIDS RESEARCH
- Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants
- (2013) S. C. J. Parker et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- RNA-Guided Human Genome Engineering via Cas9
- (2013) P. Mali et al. SCIENCE
- Multiplex Genome Engineering Using CRISPR/Cas Systems
- (2013) L. Cong et al. SCIENCE
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Iterative correction of Hi-C data reveals hallmarks of chromosome organization
- (2012) Maxim Imakaev et al. NATURE METHODS
- Systematic Localization of Common Disease-Associated Variation in Regulatory DNA
- (2012) M. T. Maurano et al. SCIENCE
- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- International network of cancer genome projects
- (2010) Thomas J. Hudson (Chairperson) et al. NATURE
- GREAT improves functional interpretation of cis-regulatory regions
- (2010) Cory Y McLean et al. NATURE BIOTECHNOLOGY
- The NIH Roadmap Epigenomics Mapping Consortium
- (2010) Bradley E Bernstein et al. NATURE BIOTECHNOLOGY
- CEAS: cis-regulatory element annotation system
- (2009) Hyunjin Shin et al. BIOINFORMATICS
- CTCF: Master Weaver of the Genome
- (2009) Jennifer E. Phillips et al. CELL
- An oestrogen-receptor-α-bound human chromatin interactome
- (2009) Melissa J. Fullwood et al. NATURE
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
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