Depletion of DNMT1 in differentiated human cells highlights key classes of sensitive genes and an interplay with polycomb repression

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DNA methylation and DNA methyltransferases

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The interplay between DNA methylation, folate and neurocognitive development

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Molecular Logic of Neuronal Self-Recognition through Protocadherin Domain Interactions

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Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells

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FBXL10 protects Polycomb-bound genes from hypermethylation

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Ontogeny, conservation and functional significance of maternally inherited DNA methylation at two classes of non-imprinted genes

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5-Hydroxymethylation marks a class of neuronal gene regulated by intragenic methylcytosine levels

(2014) Rachelle E. Irwin et al.   GENOMICS

3-Deazaneplanocin A (DZNep), an Inhibitor ofS-Adenosylmethionine-dependent Methyltransferase, Promotes Erythroid Differentiation

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Comprehensive analysis of DNA methylation data with RnBeads

(2014) Yassen Assenov et al.   NATURE METHODS

Dnmt3a Regulates Global Gene Expression in Olfactory Sensory Neurons and Enables Odorant-Induced Transcription

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Developmental Epigenetic Modification Regulates Stochastic Expression of Clustered Protocadherin Genes, Generating Single Neuron Diversity

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Acute Depletion Redefines the Division of Labor among DNA Methyltransferases in Methylating the Human Genome

(2014) Rochelle L. Tiedemann et al.   Cell Reports

Dnmt3L Antagonizes DNA Methylation at Bivalent Promoters and Favors DNA Methylation at Gene Bodies in ESCs

(2013) Francesco Neri et al.   CELL

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DNA methylation: roles in mammalian development

(2013) Zachary D. Smith et al.   NATURE REVIEWS GENETICS

Cell Cycle-Dependent Turnover of 5-Hydroxymethyl Cytosine in Mouse Embryonic Stem Cells

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Redistribution of H3K27me3 upon DNA hypomethylation results in de-repression of Polycomb target genes

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Functions of DNA methylation: islands, start sites, gene bodies and beyond

(2012) Peter A. Jones   NATURE REVIEWS GENETICS

An interspecies analysis reveals a key role for unmethylated CpG dinucleotides in vertebrate Polycomb complex recruitment

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Tissue type is a major modifier of the 5-hydroxymethylcytosine content of human genes

(2011) C. E. Nestor et al.   GENOME RESEARCH

High density DNA methylation array with single CpG site resolution

(2011) Marina Bibikova et al.   GENOMICS

DNMT1 deficiency triggers mismatch repair defects in human cells through depletion of repair protein levels in a process involving the DNA damage response

(2011) Jayne E.P. Loughery et al.   HUMAN MOLECULAR GENETICS

Mapping and analysis of chromatin state dynamics in nine human cell types

(2011) Jason Ernst et al.   NATURE

The Polycomb complex PRC2 and its mark in life

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Regulation of UGT1A1 and HNF1 transcription factor gene expression by DNA methylation in colon cancer cells

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Achieving Singularity in Mammalian Odorant Receptor Gene Choice

(2010) T. S. McClintock   CHEMICAL SENSES

Targets and dynamics of promoter DNA methylation during early mouse development

(2010) Julie Borgel et al.   NATURE GENETICS

Dnmt3a-Dependent Nonpromoter DNA Methylation Facilitates Transcription of Neurogenic Genes

(2010) H. Wu et al.   SCIENCE

H3K27me3 Profiling of the Endosperm Implies Exclusion of Polycomb Group Protein Targeting by DNA Methylation

(2010) Isabelle Weinhofer et al.   PLoS Genetics

Gonadoblastoma locus and the TSPY gene on the human Y chromosome

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The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

(2009) Rafael A Irizarry et al.   NATURE GENETICS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

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CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens

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