Convergent Metabolic Specialization through Distinct Evolutionary Paths in Pseudomonas aeruginosa

Metabolic constraints on the evolution of antibiotic resistance

(2017) Mattia Zampieri et al.   Molecular Systems Biology

Pseudomonas aeruginosa Lifestyle: A Paradigm for Adaptation, Survival, and Persistence

(2017) M. Fata Moradali et al.   Frontiers in Cellular and Infection Microbiology

Influence of the Crc regulator on the hierarchical use of carbon sources from a complete medium in P seudomonas

(2016) Ruggero La Rosa et al.   ENVIRONMENTAL MICROBIOLOGY

Tempo and mode of genome evolution in a 50,000-generation experiment

(2016) Olivier Tenaillon et al.   NATURE

Metabolic crosstalk between host and pathogen: sensing, adapting and competing

(2016) Andrew J. Olive et al.   NATURE REVIEWS MICROBIOLOGY

Distinguishing between resistance, tolerance and persistence to antibiotic treatment

(2016) Asher Brauner et al.   NATURE REVIEWS MICROBIOLOGY

Pseudomonas aeruginosa Evolutionary Adaptation and Diversification in Cystic Fibrosis Chronic Lung Infections

(2016) Craig Winstanley et al.   TRENDS IN MICROBIOLOGY

Metabolomics of pulmonary exacerbations reveals the personalized nature of cystic fibrosis disease

(2016) Robert A. Quinn et al.   PeerJ

Global Rebalancing of Cellular Resources by Pleiotropic Point Mutations Illustrates a Multi-scale Mechanism of Adaptive Evolution

(2016) Jose Utrilla et al.   Cell Systems

Within-host microevolution of Pseudomonas aeruginosa in Italian cystic fibrosis patients

(2015) Rasmus Lykke Marvig et al.   BMC MICROBIOLOGY

Regional Isolation Drives Bacterial Diversification within Cystic Fibrosis Lungs

(2015) Peter Jorth et al.   Cell Host & Microbe

Diversity of metabolic profiles of cystic fibrosis Pseudomonas aeruginosa during the early stages of lung infection

(2015) Karin Meinike Jørgensen et al.   MICROBIOLOGY-SGM

Essential genome ofPseudomonas aeruginosain cystic fibrosis sputum

(2015) Keith H. Turner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary resurrection of flagellar motility via rewiring of the nitrogen regulation system

(2015) Tiffany B. Taylor et al.   SCIENCE

The Pseudomonas aeruginosa Transcriptional Landscape Is Shaped by Environmental Heterogeneity and Genetic Variation

(2015) Andreas Dötsch et al.   mBio

Use of Adaptive Laboratory Evolution To Discover Key Mutations Enabling Rapid Growth of Escherichia coli K-12 MG1655 on Glucose Minimal Medium

(2014) Ryan A. LaCroix et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

LESS IS MORE: SELECTIVE ADVANTAGES CAN EXPLAIN THE PREVALENT LOSS OF BIOSYNTHETIC GENES IN BACTERIA

(2014) Glen D'Souza et al.   EVOLUTION

Effect of elevated oxygen concentration on bacteria, yeasts, and cells propagated for production of biological compounds

(2014) Antonino Baez et al.   Microbial Cell Factories

Convergent evolution and adaptation of Pseudomonas aeruginosa within patients with cystic fibrosis

(2014) Rasmus Lykke Marvig et al.   NATURE GENETICS

Expanded microbial genome coverage and improved protein family annotation in the COG database

(2014) Michael Y. Galperin et al.   NUCLEIC ACIDS RESEARCH

Environmental Heterogeneity Drives Within-Host Diversification and Evolution of Pseudomonas aeruginosa

(2014) T. Markussen et al.   mBio

Global metabolic network reorganization by adaptive mutations allows fast growth of Escherichia coli on glycerol

(2014) Kian-Kai Cheng et al.   Nature Communications

Requirements for Pseudomonas aeruginosa Acute Burn and Chronic Surgical Wound Infection

(2014) Keith H. Turner et al.   PLoS Genetics

Coexistence and Within-Host Evolution of Diversified Lineages of Hypermutable Pseudomonas aeruginosa in Long-term Cystic Fibrosis Infections

(2014) Sofía Feliziani et al.   PLoS Genetics

Metabolite Profiling to Characterize Disease-related Bacteria

(2013) Volker Behrends et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A relationship between Pseudomonal growth behaviour and cystic fibrosis patient lung function identified in a metabolomic investigation

(2013) Justyna Kozlowska et al.   Metabolomics

Evolutionary remodeling of global regulatory networks during long-term bacterial adaptation to human hosts

(2013) S. Damkiaer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome Analysis of a Transmissible Lineage of Pseudomonas aeruginosa Reveals Pathoadaptive Mutations and Distinct Evolutionary Paths of Hypermutators

(2013) Rasmus Lykke Marvig et al.   PLoS Genetics

Metabolic adaptations ofPseudomonas aeruginosaduring cystic fibrosis chronic lung infections

(2012) V. Behrends et al.   ENVIRONMENTAL MICROBIOLOGY

Lactate Utilization Is Regulated by the FadR-Type Regulator LldR in Pseudomonas aeruginosa

(2012) C. Gao et al.   JOURNAL OF BACTERIOLOGY

Genomic analysis of a key innovation in an experimental Escherichia coli population

(2012) Zachary D. Blount et al.   NATURE

New insights into bacterial adaptation through in vivo and in silico experimental evolution

(2012) Thomas Hindré et al.   NATURE REVIEWS MICROBIOLOGY

Adaptation of Pseudomonas aeruginosa to the cystic fibrosis airway: an evolutionary perspective

(2012) Anders Folkesson et al.   NATURE REVIEWS MICROBIOLOGY

Microbial ecology and adaptation in cystic fibrosis airways

(2011) Lei Yang et al.   ENVIRONMENTAL MICROBIOLOGY

Evolutionary dynamics of bacteria in a human host environment

(2011) L. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Are pathogenic bacteria just looking for food? Metabolism and microbial pathogenesis

(2011) Laurence Rohmer et al.   TRENDS IN MICROBIOLOGY

Regulation and Function of Versatile Aerobic and Anaerobic Respiratory Metabolism in Pseudomonas aeruginosa

(2011) Hiroyuki Arai   Frontiers in Microbiology

Contribution of oxygen-limiting conditions to persistent infection ofPseudomonas aeruginosa

(2010) Max Schobert et al.   Future Microbiology

Anaerobic physiology of Pseudomonas aeruginosa in the cystic fibrosis lung

(2010) Max Schobert et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media

(2010) T. M. Conrad et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nutrient Availability as a Mechanism for Selection of Antibiotic Tolerant Pseudomonas aeruginosa within the CF Airway

(2010) Lucas R. Hoffman et al.   PLoS Pathogens

Time-Resolved Metabolic Footprinting for Nonlinear Modeling of Bacterial Substrate Utilization

(2009) V. Behrends et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Revisiting the host as a growth medium

(2008) Stacie A. Brown et al.   NATURE REVIEWS MICROBIOLOGY