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Probing Bacterial Metabolism during Infection Using High-Resolution Transcriptomics

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A Comprehensive Analysis of In Vitro and In Vivo Genetic Fitness of Pseudomonas aeruginosa Using High-Throughput Sequencing of Transposon Libraries

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Pseudomonas aeruginosaTwitching Motility: Type IV Pili in Action

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A fine scale phenotype-genotype virulence map of a bacterial pathogen

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Pseudomonas aeruginosa biofilms perturb wound resolution and antibiotic tolerance in diabetic mice

(2012) Chase Watters et al.   MEDICAL MICROBIOLOGY AND IMMUNOLOGY

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Dual RNA-seq of pathogen and host

(2012) Alexander J. Westermann et al.   NATURE REVIEWS MICROBIOLOGY

ESSENTIALS: Software for Rapid Analysis of High Throughput Transposon Insertion Sequencing Data

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RNA-Seq-Based Monitoring of Infection-Linked Changes in Vibrio cholerae Gene Expression

(2011) Anjali Mandlik et al.   Cell Host & Microbe

The Pel and Psl polysaccharides provide Pseudomonas aeruginosa structural redundancy within the biofilm matrix

(2011) Kelly M. Colvin et al.   ENVIRONMENTAL MICROBIOLOGY

Gene regulatory networks and the role of robustness and stochasticity in the control of gene expression

(2011) L. T. MacNeil et al.   GENOME RESEARCH

Identifying microbial fitness determinants by insertion sequencing using genome-wide transposon mutant libraries

(2011) Andrew L Goodman et al.   Nature Protocols

An In Vivo Polymicrobial Biofilm Wound Infection Model to Study Interspecies Interactions

(2011) Trevor Dalton et al.   PLoS One

Genome-Scale Identification of Resistance Functions in Pseudomonas aeruginosa Using Tn-seq

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Studying bacterial transcriptomes using RNA-seq

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Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes

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Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Identifying Genetic Determinants Needed to Establish a Human Gut Symbiont in Its Habitat

(2009) Andrew L. Goodman et al.   Cell Host & Microbe

Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants

(2009) G. C. Langridge et al.   GENOME RESEARCH

Review: Lipopolysaccharide biosynthesis in Pseudomonas aeruginosa

(2009) Jerry D. King et al.   Innate Immunity

Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms

(2009) Tim van Opijnen et al.   NATURE METHODS

Enzymatic assembly of DNA molecules up to several hundred kilobases

(2009) Daniel G Gibson et al.   NATURE METHODS

The type III secretion system of Pseudomonas aeruginosa: infection by injection

(2009) Alan R. Hauser   NATURE REVIEWS MICROBIOLOGY

A global overview of burns research highlights the need for forming networks with the developing world

(2008) Tom S. Potokar et al.   BURNS

Pseudomonas aeruginosa Twitching Motility-Mediated Chemotaxis towards Phospholipids and Fatty Acids: Specificity and Metabolic Requirements

(2008) R. M. Miller et al.   JOURNAL OF BACTERIOLOGY

The Pseudomonas aeruginosa PsrA responds to long-chain fatty acid signals to regulate the fadBA5  -oxidation operon

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Revisiting the host as a growth medium

(2008) Stacie A. Brown et al.   NATURE REVIEWS MICROBIOLOGY