Comparative study on the gut microbiotas of four economically important Asian carp species

Antibiotic growth promoter olaquindox increases pathogen susceptibility in fish by inducing gut microbiota dysbiosis

(2017) Suxu He et al.   Science China-Life Sciences

Farming system transformation yields significant reduction in nutrient loading: Case study of Hongze Lake, Yangtze River Basin, China

(2016) Qidong Wang et al.   AQUACULTURE

Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing

(2016) Ravi Ranjan et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Environmental filtering decreases with fish development for the assembly of gut microbiota

(2016) Qingyun Yan et al.   ENVIRONMENTAL MICROBIOLOGY

Heat-treated high-fat diet modifies gut microbiota and metabolic markers in apoe−/− mice

(2016) Nittaya Marungruang et al.   Nutrition & Metabolism

The gut microbiome and degradation enzyme activity of wild freshwater fishes influenced by their trophic levels

(2016) Han Liu et al.   Scientific Reports

Microbial Populations in Naked Neck Chicken Ceca Raised on Pasture Flock Fed with Commercial Yeast Cell Wall Prebiotics via an Illumina MiSeq Platform

(2016) Si Hong Park et al.   PLoS One

Phasing amplicon sequencing on Illumina Miseq for robust environmental microbial community analysis

(2015) Liyou Wu et al.   BMC MICROBIOLOGY

The composition of the zebrafish intestinal microbial community varies across development

(2015) W Zac Stephens et al.   ISME Journal

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Impacts of the Three Gorges Dam on microbial structure and potential function

(2015) Qingyun Yan et al.   Scientific Reports

Protein replacement in practical diets altered gut allochthonous bacteria of cultured cyprinid species with different food habits

(2014) Zhimin Li et al.   AQUACULTURE INTERNATIONAL

First report on the autochthonous gut microbiota of brown trout (Salmo truttaLinnaeus)

(2014) Ali Al-Hisnawi et al.   AQUACULTURE RESEARCH

Comparative study on gastrointestinal microbiota of eight fish species with different feeding habits

(2014) J. Li et al.   JOURNAL OF APPLIED MICROBIOLOGY

Do the intestinal microbiotas differ between paddlefish (Polyodon spathala) and bighead carp (Aristichthys nobilis) reared in the same pond?

(2014) X.M. Li et al.   JOURNAL OF APPLIED MICROBIOLOGY

Comparative Analysis of the Intestinal Bacterial Communities in Different Species of Carp by Pyrosequencing

(2014) Tongtong Li et al.   MICROBIAL ECOLOGY

Intestinal microbiota in fishes: what's known and what's not

(2014) Kendall D. Clements et al.   MOLECULAR ECOLOGY

The effects of dietary carbohydrate sources and forms on metabolic response and intestinal microbiota in sea bass juveniles, Dicentrarchus labrax

(2013) François-Joël Gatesoupe et al.   AQUACULTURE

Factors influencing the grass carp gut microbiome and its effect on metabolism

(2013) Jiajia Ni et al.   FEMS MICROBIOLOGY ECOLOGY

Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fish

(2013) Lin Ye et al.   ISME Journal

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Enzyme-producing bacteria isolated from fish gut: a review

(2012) A.K. Ray et al.   AQUACULTURE NUTRITION

Comparison of intestinal bacterial communities in grass carp, Ctenopharyngodon idellus, from two different habitats

(2012) Jiajia Ni et al.   CHINESE JOURNAL OF OCEANOLOGY AND LIMNOLOGY

Isolation of tannase-producing microbiota from the gastrointestinal tracts of some freshwater fish

(2012) S. Mandal et al.   JOURNAL OF APPLIED ICHTHYOLOGY

Intestinal microbiota composition in fishes is influenced by host ecology and environment

(2012) SANDI WONG et al.   MOLECULAR ECOLOGY

Bacterial Community Assembly and Turnover within the Intestines of Developing Zebrafish

(2012) Qingyun Yan et al.   PLoS One

Gastrointestinal Bacteria in Rohu, Labeo Rohita (Actinopterygii: Cypriniformes: Cyprinidae): Scanning Electron Microscopy and Bacteriological Study

(2011) Koushik Ghosh et al.   ACTA ICHTHYOLOGICA ET PISCATORIA

Community Structures of Fecal Bacteria in Cattle from Different Animal Feeding Operations

(2011) Orin C. Shanks et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Cellulase-producing bacteria of Aeromonas are dominant and indigenous in the gut of Ctenopharyngodon idellus (Valenciennes)

(2011) Yan Jiang et al.   AQUACULTURE RESEARCH

Development and Application of Purified Tissue Dissociation Enzyme Mixtures for Human Hepatocyte Isolation

(2011) Roberto Gramignoli et al.   CELL TRANSPLANTATION

Evidence for a core gut microbiota in the zebrafish

(2011) Guus Roeselers et al.   ISME Journal

The role of cyanobacteria in Southern California salt marsh food webs

(2011) Carolyn A. Currin et al.   Marine Ecology-An Evolutionary Perspective

Distance-based multivariate analyses confound location and dispersion effects

(2011) David I. Warton et al.   Methods in Ecology and Evolution

Moving pictures of the human microbiome

(2011) J Gregory Caporaso et al.   GENOME BIOLOGY

Microbial diversity of intestinal contents and mucus in yellow catfish (Pelteobagrus fulvidraco)

(2010) Shangong Wu et al.   AQUACULTURE

Role of gastrointestinal microbiota in fish

(2010) Sukanta K Nayak   AQUACULTURE RESEARCH

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors

(2010) A. K. Benson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

(2009) Micah Hamady et al.   ISME Journal

Interactions between gut microbiota, host genetics and diet relevant to development of metabolic syndromes in mice

(2009) Chenhong Zhang et al.   ISME Journal

Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine

(2009) Marcus J. Claesson et al.   PLoS One

Use and exchange of aquatic resources relevant for food and aquaculture: common carp (Cyprinus carpio L.)

(2009) Zsigmond Jeney et al.   Reviews in Aquaculture