Prevalence of transcription factors in ascomycete and basidiomycete fungi

Comparative Genome Analysis and Gene Finding in Candida Species Using CGOB

(2013) Sarah L. Maguire et al.   MOLECULAR BIOLOGY AND EVOLUTION

Global Expression Profiling of Transcription Factor Genes Provides New Insights into Pathogenicity and Stress Responses in the Rice Blast Fungus

(2013) Sook-Young Park et al.   PLoS Pathogens

Expression and regulation of genes encoding lignocellulose-degrading activity in the genus Phanerochaete

(2012) Jacqueline MacDonald et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize

(2012) Hitoshi Suzuki et al.   BMC GENOMICS

Protein Modularity, Cooperative Binding, and Hybrid Regulatory States Underlie Transcriptional Network Diversification

(2012) Christopher R. Baker et al.   CELL

The blue light receptor complex WC-1/2 ofSchizophyllum communeis involved in mushroom formation and protection against phototoxicity

(2012) Robin A. Ohm et al.   ENVIRONMENTAL MICROBIOLOGY

GalX regulates thed-galactose oxido-reductive pathway inAspergillus niger

(2012) Birgit S. Gruben et al.   FEBS LETTERS

The genome of wine yeast Dekkera bruxellensis provides a tool to explore its food-related properties

(2012) Jure Piškur et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen

(2012) Åke Olson et al.   NEW PHYTOLOGIST

GenBank

(2012) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche

(2012) E. Morin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis

(2012) E. Fernandez-Fueyo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

(2012) D. Floudas et al.   SCIENCE

The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry

(2012) Pierre J. G. M. de Wit et al.   PLoS Genetics

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

(2012) Robin A. Ohm et al.   PLoS Pathogens

Transcriptomic Responses of the Softwood-Degrading White-Rot Fungus Phanerochaete carnosa during Growth on Coniferous and Deciduous Wood

(2011) Jacqueline MacDonald et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Significant Alteration of Gene Expression in Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium by Plant Species

(2011) Amber Vanden Wymelenberg et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Unique Regulatory Mechanism for d-Galactose Utilization in Aspergillus nidulans

(2011) Ulla Christensen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative genomics allowed the identification of drug targets against human fungal pathogens

(2011) Ana Karina R Abadio et al.   BMC GENOMICS

Massive Changes in Genome Architecture Accompany the Transition to Self-Fertility in the Filamentous FungusNeurospora tetrasperma

(2011) Christopher E. Ellison et al.   GENETICS

Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88

(2011) M. R. Andersen et al.   GENOME RESEARCH

Transcription factor genes of Schizophyllum commune involved in regulation of mushroom formation

(2011) Robin A. Ohm et al.   MOLECULAR MICROBIOLOGY

Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris

(2011) Randy M Berka et al.   NATURE BIOTECHNOLOGY

The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources

(2011) M. B. Arnaud et al.   NUCLEIC ACIDS RESEARCH

Whole Genome Sequence Analysis of Cryptococcus gattii from the Pacific Northwest Reveals Unexpected Diversity

(2011) John D. Gillece et al.   PLoS One

The Plant Cell Wall-Decomposing Machinery Underlies the Functional Diversity of Forest Fungi

(2011) D. C. Eastwood et al.   SCIENCE

Comparative Functional Genomics of the Fission Yeasts

(2011) N. Rhind et al.   SCIENCE

Analysis of regulation of pentose utilisation in Aspergillus niger reveals evolutionary adaptations in Eurotiales

(2011) E. Battaglia et al.   STUDIES IN MYCOLOGY

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis

(2011) Stephen B. Goodwin et al.   PLoS Genetics

Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea

(2011) Joelle Amselem et al.   PLoS Genetics

A Phenome-Based Functional Analysis of Transcription Factors in the Cereal Head Blight Fungus, Fusarium graminearum

(2011) Hokyoung Son et al.   PLoS Pathogens

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

(2011) Christian P Kubicek et al.   GENOME BIOLOGY

Comparative Transcriptome and Secretome Analysis of Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium

(2010) A. Vanden Wymelenberg et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evolution of Transcription Networks — Lessons from Yeasts

(2010) Hao Li et al.   CURRENT BIOLOGY

Exploring the bZIP transcription factor regulatory network in Neurospora crassa

(2010) C. Tian et al.   MICROBIOLOGY-SGM

Intercalation of a new tier of transcription regulation into an ancient circuit

(2010) Lauren N. Booth et al.   NATURE

Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

(2010) Francis Martin et al.   NATURE

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

(2010) Li-Jun Ma et al.   NATURE

Genome sequence of the model mushroom Schizophyllum commune

(2010) Robin A Ohm et al.   NATURE BIOTECHNOLOGY

Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)

(2010) J. E. Stajich et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptome and Secretome Analyses of Phanerochaete chrysosporium Reveal Complex Patterns of Gene Expression

(2009) A. Vanden Wymelenberg et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The first genome-level transcriptome of the wood-degrading fungus Phanerochaete chrysosporium grown on red oak

(2009) Shin Sato et al.   CURRENT GENETICS

Rearrangements of the transcriptional regulatory networks of metabolic pathways in fungi

(2009) Hugo Lavoie et al.   CURRENT OPINION IN MICROBIOLOGY

Aspergillus flavusgenomics as a tool for studying the mechanism of aflatoxin formation

(2009) Jiujiang Yu† et al.   Food Additives and Contaminants Part A-Chemistry Analysis Control Exposure & Risk Assessment

Karyotype analysis, genome organization, and stable genetic transformation of the root colonizing fungus Piriformospora indica

(2009) Alga Zuccaro et al.   FUNGAL GENETICS AND BIOLOGY

Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives

(2009) T. J. Sharpton et al.   GENOME RESEARCH

The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community

(2009) Martha B. Arnaud et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Genome, transcriptome, and secretome analysis of wood decay fungusPostia placentasupports unique mechanisms of lignocellulose conversion

(2009) Diego Martinez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Genome of Nectria haematococca: Contribution of Supernumerary Chromosomes to Gene Expansion

(2009) Jeffrey J. Coleman et al.   PLoS Genetics

FTFD: an informatics pipeline supporting phylogenomic analysis of fungal transcription factors

(2008) J. Park et al.   BIOINFORMATICS

Transcription factors in fungi

(2008) Ekaterina Shelest   FEMS MICROBIOLOGY LETTERS

Characterization of the Aspergillus niger prtT, a unique regulator of extracellular protease encoding genes

(2008) Peter J. Punt et al.   FUNGAL GENETICS AND BIOLOGY

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

(2008) F. Martin et al.   NATURE

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

(2008) Diego Martinez et al.   NATURE BIOTECHNOLOGY

Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum

(2008) Marco A van den Berg et al.   NATURE BIOTECHNOLOGY

Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus

(2008) Natalie D. Fedorova et al.   PLoS Genetics

The genome sequence of the model ascomycete fungus Podospora anserina

(2008) Eric Espagne et al.   GENOME BIOLOGY