4.7 Article

Intraspecific variability of cadmium tolerance and accumulation, and cadmium-induced cell wall modifications in the metal hyperaccumulator Arabidopsis halleri

期刊

JOURNAL OF EXPERIMENTAL BOTANY
卷 66, 期 11, 页码 3215-3227

出版社

OXFORD UNIV PRESS
DOI: 10.1093/jxb/erv144

关键词

Accumulation; Arabidopsis halleri; cadmium; cell wall; FT-IR; tolerance

资金

  1. Belgian National Fund for Scientific Research [FNRS-PDR T.0206.13]
  2. PHYMET ANR [2010 JCJC 605 01]
  3. international research group LOCOMET - French Centre National de la Recherche Scientifique (CNRS)

向作者/读者索取更多资源

Certain molecular mechanisms of Cd tolerance and accumulation have been identified in the model species Arabidopsis halleri, while intraspecific variability of these traits and the mechanisms of shoot detoxification were little addressed. The Cd tolerance and accumulation of metallicolous and non-metallicolous A. halleri populations from different genetic units were tested in controlled conditions. In addition, changes in shoot cell wall composition were investigated using Fourier transform infrared spectroscopy. Indeed, recent works on A. halleri suggest Cd sequestration both inside cells and in the cell wall/apoplast. All A. halleri populations tested were hypertolerant to Cd, and the metallicolous populations were on average the most tolerant. Accumulation was highly variable between and within populations, and populations that were non-accumulators of Cd were identified. The effect of Cd on the cell wall composition was quite similar in the sensitive species A. lyrata and in A. halleri individuals; the pectin/polysaccharide content of cell walls seems to increase after Cd treatment. Nevertheless, the changes induced by Cd were more pronounced in the less tolerant individuals, leading to a correlation between the level of tolerance and the extent of modifications. This work demonstrated that Cd tolerance and accumulation are highly variable traits in A. halleri, suggesting adaptation at the local scale and involvement of various molecular mechanisms. While in non-metallicolous populations drastic modifications of the cell wall occur due to higher Cd toxicity and/or Cd immobilization in this compartment, the increased tolerance of metallicolous populations probably involves other mechanisms such as vacuolar sequestration.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.7
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Chemistry, Analytical

FTIR Imaging of Protein Microarrays for High Throughput Secondary Structure Determination

Joelle De Meutter, Erik Goormaghtigh

Summary: The paper presents a new method for high-throughput protein structure determination using protein microarrays and FTIR imaging. It introduces a new protein library cSP92 designed to cover a wide range of structural space, and correlates spectral characteristics to secondary structure features using ASLR, PLS, and SVM. The results show that ASLR provides better results and the high throughput microarray approach is suitable for accurately determining protein secondary structure.

ANALYTICAL CHEMISTRY (2021)

Article Biophysics

Evaluation of protein secondary structure from FTIR spectra improved after partial deuteration

Joelle De Meutter, Erik Goormaghtigh

Summary: FTIR spectroscopy is a major tool for determining protein secondary structure, but the overlap of absorption bands presents a challenge. Deuteration can improve predictions for alpha-helical and other structures, with beta-sheet content better predicted in non-deuterated conditions.

EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS (2021)

Article Biophysics

Amino acid side chain contribution to protein FTIR spectra: impact on secondary structure evaluation

Joelle De Meutter, Erik Goormaghtigh

Summary: The study evaluates the contribution of amino acid side chains in the spectral region and the potential improvement of protein secondary structure prediction after correcting for their contribution. It shows that the prediction of beta-sheet content is significantly improved by subtracting amino acid side chain contributions in the amide I-amide II spectral range. Other methods such as partial least square regression and support vector machine also show improved accuracy for beta-sheet content evaluation.

EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS (2021)

Article Biophysics

Attenuated total reflection-Fourier transform infrared spectroscopy: a tool to characterize antimicrobial cyclic peptide-membrane interactions

Barbara Claro, Erik Goormaghtigh, Margarida Bastos

Summary: The study successfully characterized the structural features of two cyclic peptides in solution and upon interaction with negatively charged membranes using ATR-FTIR and polarized light, demonstrating that the presence of lipid membranes enhances the formation and orientation of tubular structures.

EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS (2021)

Article Chemistry, Analytical

A new alternative tool to analyse glycosylation in pharmaceutical proteins based on infrared spectroscopy combined with nonlinear support vector regression

Sabrina Hamla, Pierre-Yves Sacre, Allison Derenne, Kheiro-Mouna Derfoufi, Ben Cowper, Claire Butre, Arnaud Delobel, Erik Goormaghtigh, Philippe Hubert, Eric Ziemons

Summary: Glycosylation plays a critical role in the stability, bioactivity, and safety of pharmaceutical proteins. The development of fast and simple analytical methods is crucial for characterizing the composition and structure of glycoproteins. In this study, Fourier transform infrared spectroscopy (FT-IR) combined with chemometric strategies was used to analyze glycoproteins. The results demonstrate that this approach is efficient in characterizing glycosylation in therapeutic proteins. Support vector regression (SVR) models showed better predictive performances compared to Partial Least Squares Regression (PLSR) models.

ANALYST (2022)

Article Environmental Sciences

Potential ability of tobacco (Nicotiana tabacum L.) to phytomanage an urban brownfield soil

Eliana Di Lodovico, Lilian Marchand, Nadege Oustriere, Aritz Burges, Gaelle Capdeville, Regis Burlett, Sylvain Delzon, Marie-Pierre Isaure, Marta Marmiroli, Michel J. Mench

Summary: The study evaluated the potential of tobacco for phytomanaging and remediating soil ecological functions at a contaminated site. The results showed that tobacco can grow relatively well even in heavily contaminated soil, maintaining a healthy photosynthetic system under stress. The study also found that the concentrations of certain metal elements in the contaminated soil can affect the absorption of nutrients in the aboveground plant parts.

ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH (2022)

Review Plant Sciences

Essential trace metals in plant responses to heat stress

Sophie Hendrix, Nathalie Verbruggen, Ann Cuypers, Andreas J. Meyer

Summary: This work provides an overview of the interactions between trace metal homeostasis and heat stress responses in plants. Both deficiency and excess concentrations of trace metals can affect plant growth, development, and defense mechanisms. Heat stress, as a prevalent factor, negatively impacts crop yield and quality, posing a threat to food security. Understanding heat stress responses is crucial for optimizing plant growth and quality under unfavorable temperatures, with trace metals playing an important role in this process.

JOURNAL OF EXPERIMENTAL BOTANY (2022)

Article Environmental Sciences

Biological, geological and chemical effects of oxygen injection in underground gas storage aquifers in the setting of biomethane deployment

Perla G. Haddad, Jean Mura, Franck Casteran, Marion Guignard, Magali Ranchou-Peyruse, Pascale Senechal, Marie Larregieu, Marie-Pierre Isaure, Isabelle Svahn, Peter Moonen, Isabelle Le Hecho, Guilhem Hoareau, Pierre Chiquet, Guilhem Caumette, David Dequidt, Pierre Cezac, Anthony Ranchou-Peyruse

Summary: In recent years, there has been a rise in anaerobic digestion plants producing biomethane. Research has shown that oxygen may have adverse effects on deep aquifers in anaerobic environments. Experimental results indicate a decrease in sulfate and CO2 consumption in simulated underground gas storage conditions, with microbial activity utilizing methane as a carbon source, while the addition of oxygen led to sulfide re-oxidation to sulfate, resulting in decreased microbial activity.

SCIENCE OF THE TOTAL ENVIRONMENT (2022)

Editorial Material Plant Sciences

Essential trace metals: micronutrients with large impact

Zsuzsanna Kolbert, Ann Cuypers, Nathalie Verbruggen

JOURNAL OF EXPERIMENTAL BOTANY (2022)

Article Chemistry, Multidisciplinary

Simple and Scalable Chemical Surface Patterning via Direct Deposition from Immobilized Plasma Filaments in a Dielectric Barrier Discharge

Annaelle Demaude, Kitty Baert, David Petitjean, Juliette Zveny, Erik Goormaghtigh, Tom Hauffman, Michael J. Gordon, Francois Reniers

Summary: In this work, immobilization of unwanted filaments in dielectric barrier discharges (DBD) is achieved for one-step deposition of patterned coatings. By texturing one of the dielectric surfaces, chemical and topographical contrasts at sub-millimeter scale are obtained. The influence of filaments on the deposition process is investigated.

ADVANCED SCIENCE (2022)

Article Plant Sciences

Exploiting Genomic Features to Improve the Prediction of Transcription Factor-Binding Sites in Plants

Quentin Riviere, Massimiliano Corso, Madalina Ciortan, Gregoire Noel, Nathalie Verbruggen, Matthieu Defrance

Summary: In this study, a new method was developed to predict cis-regulatory elements (CREs) and target genes of plant transcription factors (TFs). The method integrates different layers of genomic features using supervised machine learning and has shown high accuracy and transferability. Validation in Arabidopsis demonstrated the successful prediction of target genes for key TFs involved in metabolite biosynthesis.

PLANT AND CELL PHYSIOLOGY (2022)

Article Biochemistry & Molecular Biology

ATR-FTIR Biosensors for Antibody Detection and Analysis

Olivier Suys, Allison Derenne, Erik Goormaghtigh

Summary: Quality control is crucial in the pharmaceutical industry. Researchers have developed a biosensor based on ATR-FTIR spectroscopy to detect immunoglobulins during their production.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2022)

Article Chemistry, Analytical

Determination of Secondary Structure of Proteins by Nanoinfrared Spectroscopy

Jehan Waeytens, Joelle De Meutter, Erik Goormaghtigh, Alexandre Dazzi, Vincent Raussens

Summary: Nanoscale infrared spectroscopy (AFMIR) has become an important tool for analyzing biological samples, particularly protein assemblies, at the nanoscale level. A method for studying the secondary structure of proteins is introduced based on a protein library of 38 well-characterized proteins. Ascending stepwise linear regression (ASLR) and partial least square (PLS) regression were used to correlate characteristic bands in the spectra with major secondary structures (alpha helices and beta sheets). ASLR appears to provide better results than PLS. The secondary structure predictions have a root mean square standard error of 6.39% for alpha helices and 6.23% for beta sheets in cross validation.

ANALYTICAL CHEMISTRY (2023)

Article Chemistry, Analytical

Pinus nigra bark from a mercury mining district studied with high resolution XANES spectroscopy

Fabrizio Bardelli, Valentina Rimondi, Pierfranco Lattanzi, Mauro Rovezzi, Marie-Pierre Isaure, Andrea Giaccherini, Pilario Costagliola

Summary: This study investigated the speciation of mercury in black pine bark using HR-XANES spectroscopy. The results showed that the outermost layer of the bark contained nanoparticulate metacinnabar (nano-beta-HgS), while deeper layers had an increasing amount of Hg-organic species. The presence of nano-beta-HgS was not solely due to wind-blown particulates from the surrounding soil, but could be the result of biochemical reactions between gaseous elemental Hg and the bark tissue.

ENVIRONMENTAL SCIENCE-PROCESSES & IMPACTS (2022)

Article Chemistry, Multidisciplinary

Geological storage of hydrogen in deep aquifers - an experimental multidisciplinary study

P. G. Haddad, M. Ranchou-Peyruse, M. Guignard, J. Mura, F. Casteran, L. Ronjon-Magand, P. Senechal, M-P Isaure, P. Moonen, G. Hoareau, D. Dequidt, P. Chiquet, G. Caumette, P. Cezac, A. Ranchou-Peyruse

Summary: This study aims to investigate the effect of H2 injection on the interactions between water formation, reservoir rock, gas mixture and microbial ecosystems in underground gas storage. The experimental results suggest that microbial life in deep aquifers plays a significant role in the transformation of H2, especially in relation to sulfate, CO2, calcite, and H2 concentrations in the system.

ENERGY & ENVIRONMENTAL SCIENCE (2022)

暂无数据