Genome-wide association studies and expression-based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense-responsive transcription factors in Populus

The potential effects of chlorogenic acid, the main phenolic components in coffee, on health: a comprehensive review of the literature

(2017) Narges Tajik et al.   EUROPEAN JOURNAL OF NUTRITION

COFACTOR: improved protein function prediction by combining structure, sequence and protein–protein interaction information

(2017) Chengxin Zhang et al.   NUCLEIC ACIDS RESEARCH

Maize Homologs of CCoAOMT and HCT, Two Key Enzymes in Lignin Biosynthesis, Form Complexes with the NLR Rp1 Protein to Modulate the Defense Response

(2016) Guan-Feng Wang et al.   PLANT PHYSIOLOGY

High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus

(2015) Wellington Muchero et al.   BMC GENOMICS

Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacteriumBacillus cereusAR156-induced systemic resistance toPseudomonas syringaepv.tomatoDC3000 in Arabidopsis

(2015) Chun-Hao Jiang et al.   JOURNAL OF EXPERIMENTAL BOTANY

The I-TASSER Suite: protein structure and function prediction

(2015) Jianyi Yang et al.   NATURE METHODS

I-TASSER server: new development for protein structure and function predictions

(2015) Jianyi Yang et al.   NUCLEIC ACIDS RESEARCH

Genome-wide identification and characterization of the Populus WRKY transcription factor family and analysis of their expression in response to biotic and abiotic stresses

(2014) Yuanzhong Jiang et al.   JOURNAL OF EXPERIMENTAL BOTANY

The effect of chlorogenic acid on blood pressure: a systematic review and meta-analysis of randomized clinical trials

(2014) I J Onakpoya et al.   JOURNAL OF HUMAN HYPERTENSION

Population genomics of Populus trichocarpa identifies signatures of selection and adaptive trait associations

(2014) Luke M Evans et al.   NATURE GENETICS

Role of HXXXD-motif/BAHD acyltransferases in the biosynthesis of extracellular lipids

(2014) Isabel Molina et al.   PLANT CELL REPORTS

Regulation of Specialized Metabolism by WRKY Transcription Factors

(2014) Craig Schluttenhofer et al.   PLANT PHYSIOLOGY

Transcriptional regulation of secondary metabolite biosynthesis in plants

(2013) Barunava Patra et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Breeding with rare defective alleles (BRDA): a naturalPopulus nigraHCT mutant with modified lignin as a case study

(2013) Bartel Vanholme et al.   NEW PHYTOLOGIST

Early lignin pathway enzymes and routes to chlorogenic acid in switchgrass (Panicum virgatum L.)

(2013) Luis L. Escamilla-Treviño et al.   PLANT MOLECULAR BIOLOGY

WRKY8 transcription factor functions in the TMV-cg defense response by mediating both abscisic acid and ethylene signaling in Arabidopsis

(2013) L. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Modifying lignin to improve bioenergy feedstocks: strengthening the barrier against pathogens?†

(2013) Scott E. Sattler et al.   Frontiers in Plant Science

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Down-regulation of the caffeic acid O-methyltransferase gene in switchgrass reveals a novel monolignol analog

(2012) Timothy J Tschaplinski et al.   Biotechnology for Biofuels

Genome-wide efficient mixed-model analysis for association studies

(2012) Xiang Zhou et al.   NATURE GENETICS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

A Structural Basis for the Biosynthesis of the Major Chlorogenic Acids Found in Coffee

(2012) L. A. Lallemand et al.   PLANT PHYSIOLOGY

Highly Efficient Isolation of Populus Mesophyll Protoplasts and Its Application in Transient Expression Assays

(2012) Jianjun Guo et al.   PLoS One

Transcription factor WRKY23 assists auxin distribution patterns during Arabidopsis root development through local control on flavonol biosynthesis

(2012) W. Grunewald et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Selective lignin downregulation leads to constitutive defense response expression in alfalfa (Medicago sativa L.)

(2011) Lina Gallego-Giraldo et al.   NEW PHYTOLOGIST

Salicylic acid mediates the reduced growth of lignin down-regulated plants

(2011) L. Gallego-Giraldo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Wounding-Induced WRKY8 Is Involved in Basal Defense in Arabidopsis

(2010) Ligang Chen et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The Growth Reduction Associated with Repressed Lignin Biosynthesis in Arabidopsis thaliana Is Independent of Flavonoids

(2010) X. Li et al.   PLANT CELL

Mutation of WRKY transcription factors initiates pith secondary wall formation and increases stem biomass in dicotyledonous plants

(2010) H. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

NMR Characterization of C3H and HCT Down-Regulated Alfalfa Lignin

(2009) Yunqiao Pu et al.   BioEnergy Research

Production of novel antioxidative phenolic amides through heterologous expression of the plant’s chlorogenic acid biosynthesis genes in yeast

(2009) Moglia Andrea et al.   METABOLIC ENGINEERING

Patterns of differential gene expression inBrassica napuscultivars infected withSclerotinia sclerotiorum

(2009) JIANWEI ZHAO et al.   MOLECULAR PLANT PATHOLOGY

Towards a Systems Approach for Lignin Biosynthesis in Populus trichocarpa: Transcript Abundance and Specificity of the Monolignol Biosynthetic Genes

(2009) Rui Shi et al.   PLANT AND CELL PHYSIOLOGY

The grapevine transcription factor WRKY2 influences the lignin pathway and xylem development in tobacco

(2009) Sabine Guillaumie et al.   PLANT MOLECULAR BIOLOGY

Elicitor-induced transcription factors for metabolic reprogramming of secondary metabolism in Medicago truncatula

(2008) Marina A Naoumkina et al.   BMC PLANT BIOLOGY

Systemic acquired resistance: the elusive signal(s)

(2008) A Corina Vlot et al.   CURRENT OPINION IN PLANT BIOLOGY

Identifying the molecular basis of QTLs: eQTLs add a new dimension

(2008) Bjarne G. Hansen et al.   TRENDS IN PLANT SCIENCE