Draft genome and reference transcriptomic resources for the urticating pine defoliator Thaumetopoea pityocampa (Lepidoptera: Notodontidae)

Proteome Analysis of Urticating Setae From Thaumetopoea pityocampa (Lepidoptera: Notodontidae)

(2017) L Berardi et al.   JOURNAL OF MEDICAL ENTOMOLOGY

Deciphering the demographic history of allochronic differentiation in the pine processionary moth Thaumetopoea pityocampa

(2017) R. Leblois et al.   MOLECULAR ECOLOGY

De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms

(2017) Francesca Giordano et al.   Scientific Reports

Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges

(2017) Anaïs Gouin et al.   Scientific Reports

Evidence for low-level hybridization between two allochronic populations of the pine processionary moth,Thaumetopoea pityocampa(Lepidoptera: Notodontidae)

(2016) Christian Burban et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Experimental evidence for heritable reproductive time in 2 allochronic populations of pine processionary moth

(2016) Manuela Branco et al.   Insect Science

Transcriptional profiling analysis of Spodoptera litura larvae challenged with Vip3Aa toxin and possible involvement of trypsin in the toxin activation

(2016) Feifei Song et al.   Scientific Reports

Genetic differentiation of the pine processionary moth at the southern edge of its range: contrasting patterns between mitochondrial and nuclear markers

(2016) M'hamed El Mokhefi et al.   Ecology and Evolution

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Genome-Wide Scan for Adaptive Divergence and Association with Population-Specific Covariates

(2015) M. Gautier   GENETICS

The Genome of Winter Moth (Operophtera brumata) Provides a Genomic Perspective on Sexual Dimorphism and Phenology

(2015) Martijn F.L. Derks et al.   Genome Biology and Evolution

Trees outside forests in agricultural landscapes: spatial distribution and impact on habitat connectivity for forest organisms

(2015) Jean-Pierre Rossi et al.   LANDSCAPE ECOLOGY

Genomic resources and their influence on the detection of the signal of positive selection in genome scans

(2015) S. Manel et al.   MOLECULAR ECOLOGY

Thede novogenome assembly and annotation of a female domestic dromedary of North African origin

(2015) Robert R. Fitak et al.   Molecular Ecology Resources

Characterization of the genome and transcriptome of the blue titCyanistes caeruleus: polymorphisms, sex-biased expression and selection signals

(2015) Jakob C. Mueller et al.   Molecular Ecology Resources

First insights into the giant panda (Ailuropoda melanoleuca) blood transcriptome: a resource for novel gene loci and immunogenetics

(2015) Lianming Du et al.   Molecular Ecology Resources

In Search of Pathogens: Transcriptome-Based Identification of Viral Sequences from the Pine Processionary Moth (Thaumetopoea pityocampa)

(2015) Agata Jakubowska et al.   Viruses-Basel

Improvement of genome assembly completeness and identification of novel full-length protein-coding genes by RNA-seq in the giant panda genome

(2015) Meili Chen et al.   Scientific Reports

Looking Beyond the Large Scale Effects of Global Change: Local Phenologies Can Result in Critical Heterogeneity in the Pine Processionary Moth

(2015) Christelle Robinet et al.   Frontiers in Physiology

PacBio Sequencing and Its Applications

(2015) Anthony Rhoads et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

IgE Sensitization to Thaumetopoea pityocampa: Diagnostic Utility of a Setae Extract, Clinical Picture and Associated Risk Factors

(2015) José María Vega et al.   INTERNATIONAL ARCHIVES OF ALLERGY AND IMMUNOLOGY

UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches

(2014) B. E. Suzek et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Establishment and analysis of a reference transcriptome for Spodoptera frugiperda

(2014) Fabrice Legeai et al.   BMC GENOMICS

Chromosome number evolution in skippers (Lepidoptera, Hesperiidae)

(2014) Vladimir Lukhtanov   Comparative Cytogenetics

Comparative analysis of two phenologically divergent populations of the pine processionary moth (Thaumetopoea pityocampa) by de novo transcriptome sequencing

(2014) Bernhard Gschloessl et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera

(2014) Virpi Ahola et al.   Nature Communications

“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files

(2014) Marc Bailly-Bechet et al.   Mobile DNA

Potential spread of the pine processionary moth in France: preliminary results from a simulation model and future challenges

(2013) Christelle Robinet et al.   ANNALS OF FOREST SCIENCE

L_RNA_scaffolder: scaffolding genomes with transcripts

(2013) Wei Xue et al.   BMC GENOMICS

Detecting and Measuring Selection from Gene Frequency Data

(2013) R. Vitalis et al.   GENETICS

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

The transcriptome of Spodoptera exigua larvae exposed to different types of microbes

(2012) Laura Pascual et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

BamTools: a C++ API and toolkit for analyzing and managing BAM files

(2011) D. W. Barnett et al.   BIOINFORMATICS

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Human-mediated long-distance jumps of the pine processionary moth in Europe

(2011) Christelle Robinet et al.   BIOLOGICAL INVASIONS

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

(2011) Hanbo Chen et al.   BMC BIOINFORMATICS

Temperature niche shift observed in a Lepidoptera population under allochronic divergence

(2011) H. SANTOS et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Urticating Hairs in Arthropods: Their Nature and Medical Significance

(2010) Andrea Battisti et al.   Annual Review of Entomology

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Incipient allochronic speciation in the pine processionary moth (Thaumetopoea pityocampa, Lepidoptera, Notodontidae)

(2010) H. SANTOS et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Direct detection of DNA methylation during single-molecule, real-time sequencing

(2010) Benjamin A Flusberg et al.   NATURE METHODS

FrameDP: sensitive peptide detection on noisy matured sequences

(2009) J. Gouzy et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Quaternary history and contemporary patterns in a currently expanding species

(2009) Carole Kerdelhué et al.   BMC EVOLUTIONARY BIOLOGY

JBrowse: A next-generation genome browser

(2009) M. E. Skinner et al.   GENOME RESEARCH

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

ECOLOGICAL COSTS ON LOCAL ADAPTATION OF AN INSECT HERBIVORE IMPOSED BY HOST PLANTS AND ENEMIES

(2008) Daniel Zovi et al.   ECOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

The genome of a lepidopteran model insect, the silkworm Bombyx mori

(2008) The International Silkworm Genome   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY