Differential specificity between closely related corals and abundant Endozoicomonas endosymbionts across global scales

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

(2015) A Apprill et al.   AQUATIC MICROBIAL ECOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Forecasted coral reef decline in marine biodiversity hotspots under climate change

(2015) Patrice Descombes et al.   GLOBAL CHANGE BIOLOGY

The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts

(2015) Tracy D Ainsworth et al.   ISME Journal

Habitat-specific environmental conditions primarily control the microbiomes of the coral Seriatopora hystrix

(2015) Olga Pantos et al.   ISME Journal

Stable and sporadic symbiotic communities of coral and algal holobionts

(2015) Eric R Hester et al.   ISME Journal

Culture-dependent and culture-independent analyses reveal no prokaryotic community shifts or recovery ofSerratia marcescensinAcropora palmatawith white pox disease

(2014) Michael P. Lesser et al.   FEMS MICROBIOLOGY ECOLOGY

Change in algal symbiont communities after bleaching, not prior heat exposure, increases heat tolerance of reef corals

(2014) Rachel N. Silverstein et al.   GLOBAL CHANGE BIOLOGY

Endozoicomonas atrinae sp. nov., isolated from the intestine of a comb pen shell Atrina pectinata

(2014) D.-W. Hyun et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Natural volcanic CO2 seeps reveal future trajectories for host–microbial associations in corals and sponges

(2014) Kathleen M Morrow et al.   ISME Journal

Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences

(2014) A Murat Eren et al.   ISME Journal

Onset and establishment of diazotrophs and other bacterial associates in the early life history stages of the coralAcropora millepora

(2014) Kimberley A. Lema et al.   MOLECULAR ECOLOGY

AssessingSymbiodiniumdiversity in scleractinian corals via next-generation sequencing-based genotyping of the ITS2 rDNA region

(2014) Chatchanit Arif et al.   MOLECULAR ECOLOGY

Deep-Sequencing Method for Quantifying Background Abundances of Symbiodinium Types: Exploring the Rare Symbiodinium Biosphere in Reef-Building Corals

(2014) Kate M. Quigley et al.   PLoS One

The Gut of Geographically Disparate Ciona intestinalis Harbors a Core Microbiota

(2014) Larry J. Dishaw et al.   PLoS One

Genomics and host specialization of honey bee and bumble bee gut symbionts

(2014) W. K. Kwong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

With eyes wide open: a revision of species within and closely related to thePocillopora damicornisspecies complex (Scleractinia; Pocilloporidae) using morphology and genetics

(2014) Sebastian Schmidt-Roach et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

The Microbiome of the Red Sea Coral Stylophora pistillata Is Dominated by Tissue-Associated Endozoicomonas Bacteria

(2013) Till Bayer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A novel agent (Endozoicomonas elysicola) responsible for epitheliocystis in cobia Rachycentrum canadum larvae

(2013) M Mendoza et al.   DISEASES OF AQUATIC ORGANISMS

Major similarities in the bacterial communities associated with lesioned and healthy Fungiidae corals

(2013) Amy Apprill et al.   ENVIRONMENTAL MICROBIOLOGY

Amplicon pyrosequencing reveals spatial and temporal consistency in diazotroph assemblages of theAcropora milleporamicrobiome

(2013) Kimberley A. Lema et al.   ENVIRONMENTAL MICROBIOLOGY

Description of Endozoicomonas euniceicola sp. nov. and Endozoicomonas gorgoniicola sp. nov., bacteria isolated from the octocorals Eunicea fusca and Plexaura sp., and an emended description of the genus Endozoicomonas

(2013) R. E. Pike et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Bacterial profiling of White Plague Disease in a comparative coral species framework

(2013) Cornelia Roder et al.   ISME Journal

Blind to morphology: genetics identifies several widespread ecologically common species and few endemics among Indo-Pacific cauliflower corals (Pocillopora, Scleractinia)

(2013) Jorge H. Pinzón et al.   JOURNAL OF BIOGEOGRAPHY

Bacterial Communities of the Gorgonian Octocoral Pseudopterogorgia elisabethae

(2013) Hebelin Correa et al.   MICROBIAL ECOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ecological Inferences from a deep screening of the Complex Bacterial Consortia associated with the coral, Porites astreoides

(2013) Mauricio Rodriguez-Lanetty et al.   MOLECULAR ECOLOGY

Bacterial profiling of White Plague Disease across corals and oceans indicates a conserved and distinct disease microbiome

(2013) Cornelia Roder et al.   MOLECULAR ECOLOGY

Transient Shifts in Bacterial Communities Associated with the Temperate Gorgonian Paramuricea clavata in the Northwestern Mediterranean Sea

(2013) Marie La Rivière et al.   PLoS One

16SrDNA Pyrosequencing of the Mediterranean Gorgonian Paramuricea clavata Reveals a Link among Alterations in Bacterial Holobiont Members, Anthropogenic Influence and Disease Outbreaks

(2013) Luigi Vezzulli et al.   PLoS One

In-situ Effects of Eutrophication and Overfishing on Physiology and Bacterial Diversity of the Red Sea Coral Acropora hemprichii

(2013) Christian Jessen et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

DNA barcoding reveals the coral “laboratory-rat”, Stylophora pistillata encompasses multiple identities

(2013) Shashank Keshavmurthy et al.   Scientific Reports

Free-living bacterial communities associated with tubeworm (Ridgeia piscesae) aggregations in contrasting diffuse flow hydrothermal vent habitats at the Main Endeavour Field, Juan de Fuca Ridge

(2013) Nathalie L. Forget et al.   MicrobiologyOpen

Specificity of Associations between Bacteria and the Coral Pocillopora meandrina during Early Development

(2012) Amy Apprill et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial Associates of Two Caribbean Coral Species Reveal Species-Specific Distribution and Geographic Variability

(2012) Kathleen M. Morrow et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Bacteria of the genus Endozoicomonas dominate the microbiome of the Mediterranean gorgonian coral Eunicella cavolini

(2012) T Bayer et al.   MARINE ECOLOGY PROGRESS SERIES

Intergenerational Transfer of Specific Bacteria in Corals and Possible Implications for Offspring Fitness

(2012) Janja Ceh et al.   MICROBIAL ECOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

The 27-year decline of coral cover on the Great Barrier Reef and its causes

(2012) G. De'ath et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Beyond the Venn diagram: the hunt for a core microbiome

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity and dynamics of bacterial communities in early life stages of the Caribbean coral Porites astreoides

(2011) Koty H Sharp et al.   ISME Journal

Estimation of divergence times in cnidarian evolution based on mitochondrial protein-coding genes and the fossil record

(2011) Eunji Park et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Response of the microbial community to coral spawning in lagoon and reef flat environments of Hawaii, USA

(2010) A Apprill et al.   AQUATIC MICROBIAL ECOLOGY

Intracellular Oceanospirillales bacteria inhabit gills of Acesta bivalves

(2010) Sigmund Jensen et al.   FEMS MICROBIOLOGY ECOLOGY

Bacterial Acquisition in Juveniles of Several Broadcast Spawning Coral Species

(2010) Koty H. Sharp et al.   PLoS One

Coral-Associated Bacteria and Their Role in the Biogeochemical Cycling of Sulfur

(2009) J.-B. Raina et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial functional structure ofMontastraea faveolata, an important Caribbean reef-building coral, differs between healthy and yellow-band diseased colonies

(2009) Nikole E. Kimes et al.   ENVIRONMENTAL MICROBIOLOGY

The onset of microbial associations in the coral Pocillopora meandrina

(2009) Amy Apprill et al.   ISME Journal

Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata

(2009) Shinichi Sunagawa et al.   ISME Journal

Patterns of genetic structure among Hawaiian corals of the genus Pocillopora yield clusters of individuals that are compatible with morphology

(2008) Jean-François Flot et al.   COMPTES RENDUS BIOLOGIES