Transcriptomic analysis and discovery of genes in the response of Arachis hypogaea to drought stress

The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut

(2016) David John Bertioli et al.   NATURE GENETICS

Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development

(2016) Jie Cui et al.   PLANT CELL

Next-generation transcriptome sequencing, SNP discovery and validation in four market classes of peanut, Arachis hypogaea L.

(2015) Ratan Chopra et al.   MOLECULAR GENETICS AND GENOMICS

The DYT1-interacting proteins bHLH010, bHLH089 and bHLH091 are redundantly required for Arabidopsis anther development and transcriptome

(2015) Engao Zhu et al.   PLANT JOURNAL

Isolation and characterization of an osmotic stress and ABA induced histone deacetylase in Arachis hygogaea

(2015) Liang-Chen Su et al.   Frontiers in Plant Science

De Novo Assembly and Discovery of Genes That Are Involved in Drought Tolerance in Tibetan Sophora moorcroftiana

(2015) Huie Li et al.   PLoS One

Isolation and characterization of drought-responsive genes from peanut roots by suppression subtractive hybridization

(2014) Hong Ding et al.   ELECTRONIC JOURNAL OF BIOTECHNOLOGY

De novo transcriptome of the desert beetle Microdera punctipennis (Coleoptera: Tenebrionidae) using illumina RNA-seq technology

(2014) Xueying Lu et al.   MOLECULAR BIOLOGY REPORTS

Expression of flavonoid biosynthesis genes and accumulation of flavonoid in wheat leaves in response to drought stress

(2014) Dongyun Ma et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Transcriptomic Analysis of Flower Development in Wintersweet (Chimonanthus praecox)

(2014) Daofeng Liu et al.   PLoS One

Heterologous Expression of the AtDREB1A Gene in Transgenic Peanut-Conferred Tolerance to Drought and Salinity Stresses

(2014) Tanmoy Sarkar et al.   PLoS One

Transcriptome sequencing and whole genome expression profiling of chrysanthemum under dehydration stress

(2013) Yanjie Xu et al.   BMC GENOMICS

Identification of drought stress-responsive transcription factors in ramie (Boehmeria nivea L. Gaud)

(2013) Touming Liu et al.   BMC PLANT BIOLOGY

Identification of stress-responsive genes in Ammopiptanthus mongolicus using ESTs generated from cold- and drought-stressed seedlings

(2013) Meiqin Liu et al.   BMC PLANT BIOLOGY

Transgenic peanut overexpressing the DREB1A transcription factor has higher yields under drought stress

(2013) Pooja Bhatnagar-Mathur et al.   MOLECULAR BREEDING

FAR-RED ELONGATED HYPOCOTYL3 and FAR-RED IMPAIRED RESPONSE1 Transcription Factors Integrate Light and Abscisic Acid Signaling in Arabidopsis

(2013) W. Tang et al.   PLANT PHYSIOLOGY

Comparative Transcriptome Profiling of a Resistant vs. Susceptible Tomato (Solanum lycopersicum) Cultivar in Response to Infection by Tomato Yellow Leaf Curl Virus

(2013) Tianzi Chen et al.   PLoS One

Effects of intercropping of peanut with the medicinal plant Atractylodes lancea on soil microecology and peanut yield in subtropical China

(2012) Chuan-Chao Dai et al.   AGROFORESTRY SYSTEMS

Global transcriptome analysis of two wild relatives of peanut under drought and fungi infection

(2012) Patricia M Guimarães et al.   BMC GENOMICS

SSR markers associated for late leaf spot disease resistance by bulked segregant analysis in groundnut (Arachis hypogaea L.)

(2012) D. Shoba et al.   EUPHYTICA

Exogenous abscisic acid increases antioxidant enzymes and related gene expression in pepper (Capsicum annuum) leaves subjected to chilling stress

(2012) W.L. Guo et al.   GENETICS AND MOLECULAR RESEARCH

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Deep sequencing analysis of the transcriptomes of peanut aerial and subterranean young pods identifies candidate genes related to early embryo abortion

(2012) Xiaoping Chen et al.   PLANT BIOTECHNOLOGY JOURNAL

RNA-Seq of Early-Infected Poplar Leaves by the Rust Pathogen Melampsora larici-populina Uncovers PtSultr3;5, a Fungal-Induced Host Sulfate Transporter

(2012) Benjamin Petre et al.   PLoS One

Identification of drought stress-responsive genes from drought-tolerant groundnut cultivar (Arachis hypogaea L. cv K-134) through analysis of subtracted expressed sequence tags

(2011) G. S. Ranganayakulu et al.   ACTA PHYSIOLOGIAE PLANTARUM

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Transcriptome profiling of the rice blast fungus during invasive plant infection and in vitro stresses

(2011) Sandra M Mathioni et al.   BMC GENOMICS

Hormone Signalling Crosstalk in Plant Growth Regulation

(2011) Stephen Depuydt et al.   CURRENT BIOLOGY

Isolation and expression analysis of LEA genes in peanut (Arachis hypogaea L.)

(2011) Lei Su et al.   JOURNAL OF BIOSCIENCES

Validation of reference genes for gene expression studies in peanut by quantitative real-time RT-PCR

(2011) Xiaoyuan Chi et al.   MOLECULAR GENETICS AND GENOMICS

Plant tolerance to drought and salinity: stress regulating transcription factors and their functional significance in the cellular transcriptional network

(2011) Dortje Golldack et al.   PLANT CELL REPORTS

System responses to long-term drought and re-watering of two contrasting alfalfa varieties

(2011) Yun Kang et al.   PLANT JOURNAL

Expression and Localization of Arachis Hypogaea 9-Cis Epoxycarotenoid Dioxygenase 1 (AhNCED1) of Peanut Under Water Stress

(2010) B. Hu et al.   BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT

Narrowing Down the Targets: Towards Successful Genetic Engineering of Drought-Tolerant Crops

(2010) Shujun Yang et al.   Molecular Plant

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

Genetic manipulation of Japonica rice using the OsBADH1 gene from Indica rice to improve salinity tolerance

(2010) Supaporn Hasthanasombut et al.   PLANT CELL TISSUE AND ORGAN CULTURE

OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice

(2010) Ju-Seok Seo et al.   PLANT JOURNAL

Desiccation-Induced Structuralization and Glass Formation of Group 3 Late Embryogenesis Abundant Protein Model Peptides

(2009) Tempei Shimizu et al.   BIOCHEMISTRY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Identification and functional validation of a unique set of drought induced genes preferentially expressed in response to gradual water stress in peanut

(2009) Geetha Govind et al.   MOLECULAR GENETICS AND GENOMICS

Characterization of dihydroflavonol 4-reductase cDNA in tea [Camellia sinensis (L.) O. Kuntze]

(2009) Kashmir Singh et al.   Plant Biotechnology Reports

Silencing of a single gene in tomato plants resistant to Tomato yellow leaf curl virus renders them susceptible to the virus

(2009) Assaf Eybishtz et al.   PLANT MOLECULAR BIOLOGY

Cloning of Ten Peroxidase (POD) Genes from Tamarix Hispida and Characterization of their Responses to Abiotic Stress

(2009) Caiqiu Gao et al.   PLANT MOLECULAR BIOLOGY REPORTER

Plant drought stress: effects, mechanisms and management

(2008) M. Farooq et al.   Agronomy for Sustainable Development

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

The relationship of drought-related gene expression in Arabidopsis thaliana to hormonal and environmental factors

(2008) Daiqing Huang et al.   JOURNAL OF EXPERIMENTAL BOTANY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Inventory, evolution and expression profiling diversity of the LEA (late embryogenesis abundant) protein gene family in Arabidopsis thaliana

(2008) Natacha Bies-Ethève et al.   PLANT MOLECULAR BIOLOGY

The Enigmatic LEA Proteins and Other Hydrophilins

(2008) M. Battaglia et al.   PLANT PHYSIOLOGY