Insights into metabolic osmoadaptation of the ectoines-producer bacterium Chromohalobacter salexigens through a high-quality genome scale metabolic model

Reconstruction of the metabolic network of Pseudomonas aeruginosa to interrogate virulence factor synthesis

(2017) Jennifer A. Bartell et al.   Nature Communications

Using Genome-scale Models to Predict Biological Capabilities

(2015) Edward J. O’Brien et al.   CELL

Pseudomonas putidaKT2440 Strain Metabolizes Glucose through a Cycle Formed by Enzymes of the Entner-Doudoroff, Embden-Meyerhof-Parnas, and Pentose Phosphate Pathways

(2015) Pablo I. Nikel et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Genomic analysis reveals the biotechnological and industrial potential of levan producing halophilic extremophile, Halomonas smyrnensis AAD6T

(2015) Elif Diken et al.   SpringerPlus

A curated C. difficile strain 630 metabolic network: prediction of essential targets and inhibitors

(2014) Mathieu Larocque et al.   BMC Systems Biology

CEG: a database of essential gene clusters

(2013) Yuan-Nong Ye et al.   BMC GENOMICS

Solving gap metabolites and blocked reactions in genome-scale models: application to the metabolic network of Blattabacterium cuenoti

(2013) Miguel Ponce-de-León et al.   BMC Systems Biology

Role of Central Metabolism in the Osmoadaptation of the Halophilic BacteriumChromohalobacter salexigens

(2013) José M. Pastor et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Establishment, in silico analysis, and experimental verification of a large-scale metabolic network of the xanthan producing Xanthomonas campestris pv. campestris strain B100

(2013) Sarah Schatschneider et al.   JOURNAL OF BIOTECHNOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Temperature- and Salinity-Decoupled Overproduction of Hydroxyectoine by Chromohalobacter salexigens

(2012) Javier Rodríguez-Moya et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genome-scale modeling using flux ratio constraints to enable metabolic engineering of clostridial metabolism in silico

(2012) Michael J McAnulty et al.   BMC Systems Biology

Constraining the metabolic genotype–phenotype relationship using a phylogeny of in silico methods

(2012) Nathan E. Lewis et al.   NATURE REVIEWS MICROBIOLOGY

Complete genome sequence of the halophilic and highly halotolerant Chromohalobacter salexigens type strain (1H11T)

(2012) Alex Copeland et al.   Standards in Genomic Sciences

Absynte: a web tool to analyze the evolution of orthologous archaeal and bacterial gene clusters

(2011) A. Despalins et al.   BIOINFORMATICS

Genome-scale reconstruction of metabolic network for a halophilic extremophile, Chromohalobacter salexigens DSM 3043

(2011) Özlem Ates et al.   BMC Systems Biology

Modelling osmotic stress by Flux Balance Analysis at the genomic scale

(2011) Aline Metris et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011

(2011) J. D. Orth et al.   Molecular Systems Biology

Process optimization of the integrated synthesis and secretion of ectoine and hydroxyectoine under hyper/hypo-osmotic stress

(2010) C. Fallet et al.   BIOTECHNOLOGY AND BIOENGINEERING

Systematizing the generation of missing metabolic knowledge

(2010) Jeffrey D. Orth et al.   BIOTECHNOLOGY AND BIOENGINEERING

The biomass objective function

(2010) Adam M Feist et al.   CURRENT OPINION IN MICROBIOLOGY

A blueprint of ectoine metabolism from the genome of the industrial producer Halomonas elongata DSM 2581T

(2010) Karin Schwibbert et al.   ENVIRONMENTAL MICROBIOLOGY

A protocol for generating a high-quality genome-scale metabolic reconstruction

(2010) Ines Thiele et al.   Nature Protocols

Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology

(2008) Jacek Puchałka et al.   PLoS Computational Biology

Is maximization of molar yield in metabolic networks favoured by evolution?

(2007) Stefan Schuster et al.   JOURNAL OF THEORETICAL BIOLOGY