Construction of Ultradense Linkage Maps with Lep-MAP2: Stickleback F2Recombinant Crosses as an Example

Flight-induced changes in gene expression in the Glanville fritillary butterfly

(2015) Jouni Kvist et al.   MOLECULAR ECOLOGY

Genome Assembly Improvement and Mapping Convergently Evolved Skeletal Traits in Sticklebacks with Genotyping-by-Sequencing

(2015) Andrew M. Glazer et al.   G3-Genes Genomes Genetics

Using linkage maps to correct and scaffold de novo genome assemblies: methods, challenges, and computational tools

(2015) Janna L. Fierst   Frontiers in Genetics

Theoretical models of the influence of genomic architecture on the dynamics of speciation

(2014) Samuel M. Flaxman et al.   MOLECULAR ECOLOGY

Construction and Analysis of High-Density Linkage Map Using High-Throughput Sequencing Data

(2014) Dongyuan Liu et al.   PLoS One

Comparative genomics reveals insights into avian genome evolution and adaptation

(2014) G. Zhang et al.   SCIENCE

Nine-spined stickleback (Pungitius pungitius): an emerging model for evolutionary biology research

(2013) Juha Merilä   Annals of the New York Academy of Sciences

Lep-MAP: fast and accurate linkage map construction for large SNP datasets

(2013) Pasi Rastas et al.   BIOINFORMATICS

A RAD-based linkage map and comparative genomics in the gudgeons (genus Gnathopogon, Cyprinidae)

(2013) Ryo Kakioka et al.   BMC GENOMICS

Genomic divergence between nine- and three-spined sticklebacks

(2013) Baocheng Guo et al.   BMC GENOMICS

A radiation hybrid map of chromosome 1D reveals synteny conservation at a wheat speciation locus

(2013) Monika K. Michalak de Jimenez et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Progressive Recombination Suppression and Differentiation in Recently Evolved Neo-sex Chromosomes

(2013) Heini M. Natri et al.   MOLECULAR BIOLOGY AND EVOLUTION

Quantitative trait loci for growth and body size in the nine-spined sticklebackPungitius pungitiusL.

(2013) Veronika N. Laine et al.   MOLECULAR ECOLOGY

Genomic rearrangements and the evolution of clusters of locally adaptive loci

(2013) S. Yeaman   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic Architecture of Parallel Pelvic Reduction in Ninespine Sticklebacks

(2013) Takahito Shikano et al.   G3-Genes Genomes Genetics

A Hybrid Genetic Linkage Map of Two Ecologically and Morphologically Divergent Midas Cichlid Fishes ( Amphilophus spp.) Obtained by Massively Parallel DNA Sequencing (ddRADSeq)

(2013) Hans Recknagel et al.   G3-Genes Genomes Genetics

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

High degree of sex chromosome differentiation in stickleback fishes

(2011) Takahito Shikano et al.   BMC GENOMICS

Turnover of sex chromosomes and speciation in fishes

(2011) Jun Kitano et al.   ENVIRONMENTAL BIOLOGY OF FISHES

Scrambling Eggs: Meiotic Drive and the Evolution of Female Recombination Rates

(2011) Yaniv Brandvain et al.   GENETICS

Multipoint maximum likelihood mapping in a full-sib family of an outbreeding species

(2011) J. W. VAN OOIJEN   Genetics Research

Integration of the Genetic Map and Genome Assembly of Fugu Facilitates Insights into Distinct Features of Genome Evolution in Teleosts and Mammals

(2011) Wataru Kai et al.   Genome Biology and Evolution

Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes

(2011) P. A. Hohenlohe et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Population genomics of parallel phenotypic evolution in stickleback across stream-lake ecological transitions

(2011) B. E. Deagle et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Utility of sequenced genomes for microsatellite marker development in non-model organisms: a case study of functionally important genes in nine-spined sticklebacks (Pungitius pungitius)

(2010) Takahito Shikano et al.   BMC GENOMICS

A hidden Markov model approach to multilocus linkage analysis in a full-sib family

(2010) Chunfa Tong et al.   Tree Genetics & Genomes

How and Why Chromosome Inversions Evolve

(2010) Mark Kirkpatrick   PLOS BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

The World's Oldest Fossil Threespine Stickleback Fish

(2009) Michael A. Bell et al.   COPEIA

The Genetic Architecture of Skeletal Convergence and Sex Determination in Ninespine Sticklebacks

(2009) Michael D. Shapiro et al.   CURRENT BIOLOGY

Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories

(2009) D. M. Larkin et al.   GENOME RESEARCH

Genetic architecture of quantitative traits in mice, flies, and humans

(2009) J. Flint et al.   GENOME RESEARCH

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

The Darwinian stickleback Gasterosteus aculeatus: a history of evolutionary studies*

(2009) R. J. Wootton   JOURNAL OF FISH BIOLOGY

A role for a neo-sex chromosome in stickleback speciation

(2009) Jun Kitano et al.   NATURE

Mapping genes for complex traits in domestic animals and their use in breeding programmes

(2009) Michael E. Goddard et al.   NATURE REVIEWS GENETICS

Genetic linkage map of the guppy, Poecilia reticulata, and quantitative trait loci analysis of male size and colour variation

(2009) N. Tripathi et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Sex Determination and Sex Chromosome Evolution: Insights from Medaka

(2009) M. Kondo et al.   Sexual Development

Evolutionary Diversity and Turn-Over of Sex Determination in Teleost Fishes

(2009) J.E. Mank et al.   Sexual Development

Turnover of Sex Chromosomes in the Stickleback Fishes (Gasterosteidae)

(2009) Joseph A. Ross et al.   PLoS Genetics

The Genomics of Speciation in Drosophila: Diversity, Divergence, and Introgression Estimated Using Low-Coverage Genome Sequencing

(2009) Rob J. Kulathinal et al.   PLoS Genetics

Construction of a high-resolution genetic linkage map and comparative genome analysis for the reef-building coral Acropora millepora

(2009) Shi Wang et al.   GENOME BIOLOGY

Gene mapping in the wild with SNPs: guidelines and future directions

(2008) Jon Slate et al.   GENETICA

Heteromorphic sex chromosomes in the ninespine stickleback Pungitius pungitius

(2008) K. Ocalewicz et al.   JOURNAL OF FISH BIOLOGY

Stickleback phylogenies resolved: Evidence from mitochondrial genomes and 11 nuclear genes

(2008) Ryouka Kawahara et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION