Genomic divergence between nine- and three-spined sticklebacks

Nine-spined stickleback (Pungitius pungitius): an emerging model for evolutionary biology research

(2013) Juha Merilä   Annals of the New York Academy of Sciences

The genomic signature of dog domestication reveals adaptation to a starch-rich diet

(2013) Erik Axelsson et al.   NATURE

High levels of fluctuating asymmetry in isolated stickleback populations

(2012) Nina Trokovic et al.   BMC EVOLUTIONARY BIOLOGY

Patterns of Transcriptome Divergence in the Male Accessory Gland of Two Closely Related Species of Field Crickets

(2012) J. A. Andres et al.   GENETICS

Pervasive Indels and Their Evolutionary Dynamics after the Fish-Specific Genome Duplication

(2012) Baocheng Guo et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular evolutionary and population genomic analysis of the nine-spined stickleback using a modified restriction-site-associated DNA tag approach

(2012) Matthieu Bruneaux et al.   MOLECULAR ECOLOGY

Genome-wide patterns of standing genetic variation in a marine population of three-spined sticklebacks

(2012) PHILINE G. D. FEULNER et al.   MOLECULAR ECOLOGY

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

Brain development and predation: plastic responses depend on evolutionary history

(2011) A. Gonda et al.   Biology Letters

Population variation in brain size of nine-spined sticklebacks (Pungitius pungitius) - local adaptation or environmentally induced variation?

(2011) Abigél Gonda et al.   BMC EVOLUTIONARY BIOLOGY

A Genome-wide SNP Genotyping Array Reveals Patterns of Global and Repeated Species-Pair Divergence in Sticklebacks

(2011) Felicity C. Jones et al.   CURRENT BIOLOGY

Intraspecific divergence in the lateral line system in the nine-spined stickleback (Pungitius pungitius)

(2011) N. TROKOVIC et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Phylogeography and Genetic Structuring of European Nine-Spined Sticklebacks (Pungitius pungitius)—Mitochondrial DNA Evidence

(2011) Amber G. F. Teacher et al.   PLoS One

Quantitative Genetics of Body Size and Timing of Maturation in Two Nine-Spined Stickleback (Pungitius pungitius) Populations

(2011) Yukinori Shimada et al.   PLoS One

Physiological differentiation among nine-spined stickleback populations: Effects of copper exposure

(2010) Wolfgang Waser et al.   AQUATIC TOXICOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Utility of sequenced genomes for microsatellite marker development in non-model organisms: a case study of functionally important genes in nine-spined sticklebacks (Pungitius pungitius)

(2010) Takahito Shikano et al.   BMC GENOMICS

Genome size evolution in pufferfish: an insight from BAC clone-based Diodon holocanthus genome sequencing

(2010) Baocheng Guo et al.   BMC GENOMICS

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

(2010) Thomas L Parchman et al.   BMC GENOMICS

Identification of Local- and Habitat-Dependent Selection: Scanning Functionally Important Genes in Nine-Spined Sticklebacks (Pungitius pungitius)

(2010) T. Shikano et al.   MOLECULAR BIOLOGY AND EVOLUTION

Estimation of the Neutrality Index

(2010) N. Stoletzki et al.   MOLECULAR BIOLOGY AND EVOLUTION

Interpopulation patterns of divergence and selection across the transcriptome of the copepod Tigriopus californicus

(2010) FELIPE S. BARRETO et al.   MOLECULAR ECOLOGY

Phylogeography of ninespine sticklebacks (Pungitius pungitius) in North America: glacial refugia and the origins of adaptive traits

(2010) JACLYN T. ALDENHOVEN et al.   MOLECULAR ECOLOGY

History vs. habitat type: explaining the genetic structure of European nine-spined stickleback (Pungitius pungitius) populations

(2010) TAKAHITO SHIKANO et al.   MOLECULAR ECOLOGY

Adaptation genomics: the next generation

(2010) Jessica Stapley et al.   TRENDS IN ECOLOGY & EVOLUTION

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

(2009) Eli Meyer et al.   BMC GENOMICS

EVOLUTION OF GIGANTISM IN NINE-SPINED STICKLEBACKS

(2009) Gábor Herczeg et al.   EVOLUTION

Sox genes evolution in closely related young tetraploid cyprinid fishes and their diploid relative

(2009) Baocheng Guo et al.   GENE

Predation mediated population divergence in complex behaviour of nine-spined stickleback (Pungitius pungitius)

(2009) G. HERCZEG et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Adaptive brain size divergence in nine-spined sticklebacks (Pungitius pungitius)?

(2009) A. GONDA et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer

(2009) Y. F. Chan et al.   SCIENCE

The Genomics of Speciation in Drosophila: Diversity, Divergence, and Introgression Estimated Using Low-Coverage Genome Sequencing

(2009) Rob J. Kulathinal et al.   PLoS Genetics

Rapidly evolving fish genomes and teleost diversity

(2008) Vydianathan Ravi et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

(2008) J. CRISTOBAL VERA et al.   MOLECULAR ECOLOGY

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

A genome-wide view of the spectrum of spontaneous mutations in yeast

(2008) M. Lynch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA