Environmental Selection Pressures Related to Iron Utilization Are Involved in the Loss of the Flavodoxin Gene from the Plant Genome

The long goodbye: the rise and fall of flavodoxin during plant evolution

(2014) J. J. Pierella Karlusich et al.   JOURNAL OF EXPERIMENTAL BOTANY

Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus

(2014) N. Kashtan et al.   SCIENCE

Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation

(2014) Koichi Hori et al.   Nature Communications

The Number, Speed, and Impact of Plastid Endosymbioses in Eukaryotic Evolution

(2013) Patrick J. Keeling   Annual Review of Plant Biology

Ferredoxin-dependent glutamate synthase: involvement in ammonium assimilation in Haloferax mediterranei

(2013) C. Pire et al.   EXTREMOPHILES

Structural and Phylogenetic Analysis of Rhodobacter capsulatus NifF: Uncovering General Features of Nitrogen-fixation (nif)-Flavodoxins

(2013) Inmaculada Pérez-Dorado et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Functions, Compositions, and Evolution of the Two Types of Carboxysomes: Polyhedral Microcompartments That Facilitate CO2 Fixation in Cyanobacteria and Some Proteobacteria

(2013) B. D. Rae et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Interactions of photosynthesis with genome size and function

(2013) J. A. Raven et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Iron Uptake, Translocation, and Regulation in Higher Plants

(2012) Takanori Kobayashi et al.   Annual Review of Plant Biology

Global analysis of plastid diversity reveals apicomplexan-related lineages in coral reefs

(2012) Jan Janouškovec et al.   CURRENT BIOLOGY

Re-evaluating the Green versus Red Signal in Eukaryotes with Secondary Plastid of Red Algal Origin

(2012) Fabien Burki et al.   Genome Biology and Evolution

Nucleomorph Genome Sequence of the Cryptophyte Alga Chroomonas mesostigmatica CCMP1168 Reveals Lineage-Specific Gene Loss and Genome Complexity

(2012) Christa E. Moore et al.   Genome Biology and Evolution

Ecological and evolutionary genomics of marine photosynthetic organisms

(2012) Susana M. Coelho et al.   MOLECULAR ECOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Plant type ferredoxins and ferredoxin-dependent metabolism

(2012) GUY HANKE et al.   PLANT CELL AND ENVIRONMENT

Analysis of the Global Ocean Sampling (GOS) Project for Trends in Iron Uptake by Surface Ocean Microbes

(2012) Eve Toulza et al.   PLoS One

Ferredoxin Containing Bacteriocins Suggest a Novel Mechanism of Iron Uptake in Pectobacterium spp

(2012) Rhys Grinter et al.   PLoS One

Broad Phylogenomic Sampling and the Sister Lineage of Land Plants

(2012) Ruth E. Timme et al.   PLoS One

Metagenomes of the Picoalga Bathycoccus from the Chile Coastal Upwelling

(2012) Daniel Vaulot et al.   PLoS One

IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project

(2012) Victor M. Markowitz et al.   PLoS One

Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea

(2012) S. Nelson-Sathi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Factors Influencing the Diversity of Iron Uptake Systems in Aquatic Microorganisms

(2012) Dhwani K. Desai et al.   Frontiers in Microbiology

Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage

(2012) Hervé Moreau et al.   GENOME BIOLOGY

Into the deep: New discoveries at the base of the green plant phylogeny

(2011) Frederik Leliaert et al.   BIOESSAYS

Recent transfer of an iron-regulated gene from the plastid to the nuclear genome in an oceanic diatom adapted to chronic iron limitation

(2011) Markus Lommer et al.   BMC GENOMICS

Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges

(2011) Adam Monier et al.   ENVIRONMENTAL MICROBIOLOGY

Superoxide dismutases: Ancient enzymes and new insights

(2011) Anne-Frances Miller   FEBS LETTERS

Transcriptome response of high- and low-light-adapted Prochlorococcus strains to changing iron availability

(2011) Anne W Thompson et al.   ISME Journal

THE CYANOBACTERIAL CHLOROPHYLL-BINDING-PROTEIN ISIA ACTS TO INCREASE THE IN VIVO EFFECTIVE ABSORPTION CROSS-SECTION OF PSI UNDER IRON LIMITATION1

(2011) Thomas J. Ryan-Keogh et al.   JOURNAL OF PHYCOLOGY

Iron conservation by reduction of metalloenzyme inventories in the marine diazotroph Crocosphaera watsonii

(2011) M. A. Saito et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ROS signaling: the new wave?

(2011) Ron Mittler et al.   TRENDS IN PLANT SCIENCE

Characterization of Putative Iron Responsive Genes as Species-Specific Indicators of Iron Stress in Thalassiosiroid Diatoms

(2011) LeAnn P. Whitney et al.   Frontiers in Microbiology

The endosymbiotic origin, diversification and fate of plastids

(2010) P. J. Keeling   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Nitrogen fixation persists under conditions of salt stress in transgenic Medicago truncatula plants expressing a cyanobacterial flavodoxin

(2010) Teodoro Coba de la Peña et al.   PLANT BIOTECHNOLOGY JOURNAL

Cyanobacterial flavodoxin complements ferredoxin deficiency in knocked-down transgenic tobacco plants

(2010) Nicolás E. Blanco et al.   PLANT JOURNAL

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea

(2010) C. B. Walker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Streptophyte algae and the origin of embryophytes

(2009) Burkhard Becker et al.   ANNALS OF BOTANY

Iron stress genes in marineSynechococcusand the development of a flow cytometric iron stress assay

(2009) Adam R. Rivers et al.   ENVIRONMENTAL MICROBIOLOGY

A molecular assessment of the iron stress response in the two phylogenetic clades ofTrichodesmium

(2009) P. Dreux Chappell et al.   ENVIRONMENTAL MICROBIOLOGY

Timing of morphological and ecological innovations in the cyanobacteria – a key to understanding the rise in atmospheric oxygen

(2009) C. E. BLANK et al.   Geobiology

Two flavodoxin genes in Trichodesmium (Oscillatoriales, Cyanophyceae): Remarkable sequence divergence and possible functional diversification

(2009) Senjie Lin et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

DEVELOPMENT OF IMMUNOASSAYS FOR THE IRON-REGULATED PROTEINS FERREDOXIN AND FLAVODOXIN IN POLAR MICROALGAE

(2009) Andrew Pankowski et al.   JOURNAL OF PHYCOLOGY

The give-and-take of DNA: horizontal gene transfer in plants

(2009) Ralph Bock   TRENDS IN PLANT SCIENCE

Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework

(2008) Kazutaka Katoh et al.   BMC BIOINFORMATICS

Evidence of a chimeric genome in the cyanobacterial ancestor of plastids

(2008) Jeferson Gross et al.   BMC EVOLUTIONARY BIOLOGY

A Novel Plant Ferredoxin-Like Protein and the Regulator Hor Are Quorum-Sensing Targets in the Plant PathogenErwinia carotovora

(2008) Solveig Sjöblom et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

A photosynthetic alveolate closely related to apicomplexan parasites

(2008) Robert B. Moore et al.   NATURE

Horizontal gene transfer in eukaryotic evolution

(2008) Patrick J. Keeling et al.   NATURE REVIEWS GENETICS

Horizontal gene transfer of the algal nuclear gene psbO to the photosynthetic sea slug Elysia chlorotica

(2008) M. E. Rumpho et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Combating stress with flavodoxin: a promising route for crop improvement

(2008) Matias D. Zurbriggen et al.   TRENDS IN BIOTECHNOLOGY