Evolution of Proteasome Regulators in Eukaryotes

Proteasomes Associated with the Blm10 Activator Protein Antagonize Mitochondrial Fission through Degradation of the Fission Protein Dnm1

(2014) Krisztina Tar et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Molecular and Cellular Roles of PI31 (PSMF1) Protein in Regulation of Proteasome Function

(2014) Xiaohua Li et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

N-Terminal α7 Deletion of the Proteasome 20S Core Particle Substitutes for Yeast PI31 Function

(2014) Hideki Yashiroda et al.   MOLECULAR AND CELLULAR BIOLOGY

On the Age of Eukaryotes: Evaluating Evidence from Fossils and Molecular Clocks

(2014) L. Eme et al.   Cold Spring Harbor Perspectives in Biology

Molecular Architecture and Assembly of the Eukaryotic Proteasome

(2013) Robert J. Tomko et al.   Annual Review of Biochemistry

Cytoplasmic ribosomal protein S3 (rpS3) plays a pivotal role in mitochondrial DNA damage surveillance

(2013) YongJoong Kim et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Horizontal gene transfer of epigenetic machinery and evolution of parasitism in the malaria parasite Plasmodium falciparum and other apicomplexans

(2013) Sandeep P Kishore et al.   BMC EVOLUTIONARY BIOLOGY

Acetylation-Mediated Proteasomal Degradation of Core Histones during DNA Repair and Spermatogenesis

(2013) Min-Xian Qian et al.   CELL

Molecular and functional characterization of a putative PA28γ proteasome activator orthologue in Schistosoma mansoni

(2013) Cláudia Sossai Soares et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Accelerated Evolution after Gene Duplication: A Time-Dependent Process Affecting Just One Copy

(2013) Cinta Pegueroles et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ensembl 2014

(2013) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria)

(2012) Ylenia Chiari et al.   BMC BIOLOGY

Fub1p, a novel protein isolated by boundary screening, binds the proteasome complex

(2012) Akira Hatanaka et al.   GENES & GENETIC SYSTEMS

The Revised Classification of Eukaryotes

(2012) Sina M. Adl et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Archaeal JAB1/MPN/MOV34 metalloenzyme (HvJAMM1) cleaves ubiquitin-like small archaeal modifier proteins (SAMPs) from protein-conjugates

(2012) Nathaniel L. Hepowit et al.   MOLECULAR MICROBIOLOGY

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach

(2012) K. Lasker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

FAT10 and NUB1L bind to the VWA domain of Rpn10 and Rpn1 to enable proteasome-mediated proteolysis

(2012) Neha Rani et al.   Nature Communications

Loss of a 20S Proteasome Activator in Saccharomyces cerevisiae Downregulates Genes Important for Genomic Integrity, Increases DNA Damage, and Selectively Sensitizes Cells to Agents With Diverse Mechanisms of Action

(2012) Kevin M. Doherty et al.   G3-Genes Genomes Genetics

A Conserved F Box Regulatory Complex Controls Proteasome Activity in Drosophila

(2011) Maya Bader et al.   CELL

Blm10 Protein Promotes Proteasomal Substrate Turnover by an Active Gating Mechanism

(2011) Thomas Dange et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Alveolate Phylogeny Inferred using Concatenated Ribosomal Proteins

(2011) TSVETAN R. BACHVAROFF et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

(2010) Alexis Criscuolo et al.   BMC EVOLUTIONARY BIOLOGY

Genome analysis and comparative genomics of a Giardia intestinalis assemblage E isolate

(2010) Jon Jerlström-Hultqvist et al.   BMC GENOMICS

Phylogenomic Evidence for Separate Acquisition of Plastids in Cryptophytes, Haptophytes, and Stramenopiles

(2010) D. Baurain et al.   MOLECULAR BIOLOGY AND EVOLUTION

Structure of a Blm10 Complex Reveals Common Mechanisms for Proteasome Binding and Gate Opening

(2010) Kianoush Sadre-Bazzaz et al.   MOLECULAR CELL

Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group

(2010) Takuro Nunoura et al.   NUCLEIC ACIDS RESEARCH

Characterization and mRNA expression analysis of PI31, an endogenous proteasome inhibitor from Schistosoma mansoni

(2010) Carla Botelho-Machado et al.   PARASITOLOGY RESEARCH

Regulators of the Proteasome Pathway, Uch37 and Rpn13, Play Distinct Roles in Mouse Development

(2010) Amin Al-Shami et al.   PLoS One

Characterization of a REG/PA28 Proteasome Activator Homolog inDictyostelium discoideumIndicates that the Ubiquitin- and ATP-Independent REGγ Proteasome Is an Ancient Nuclear Protease

(2009) Patrick Masson et al.   EUKARYOTIC CELL

Structure and Activity of the N-Terminal Substrate Recognition Domains in Proteasomal ATPases

(2009) Sergej Djuranovic et al.   MOLECULAR CELL

Structural Insights into the Regulatory Particle of the Proteasome from Methanocaldococcus jannaschii

(2009) Fan Zhang et al.   MOLECULAR CELL

Origin and function of ubiquitin-like proteins

(2009) Mark Hochstrasser   NATURE

The proteasome 11S regulator subunit REGα (PA28α) is a heptamer

(2009) Steven C. Johnston et al.   PROTEIN SCIENCE

Sequence analysis of the AAA protein family

(2009) Andreas Beyer   PROTEIN SCIENCE

Proteasome activator PA28γ regulates p53 by enhancing its MDM2-mediated degradation

(2008) Zhuo Zhang et al.   EMBO JOURNAL

Structure of a Conserved Dimerization Domain within the F-box Protein Fbxo7 and the PI31 Proteasome Inhibitor

(2008) Rebecca Kirk et al.   JOURNAL OF BIOLOGICAL CHEMISTRY