Interspecific Differential Expression Analysis of RNA-Seq Data Yields Insight into Life Cycle Variation in Hydractiniid Hydrozoans

Expression of Wnt pathway genes in polyps and medusa-like structures ofEctopleura larynx(Cnidaria: Hydrozoa)

(2015) Annalise M. Nawrocki et al.   EVOLUTION & DEVELOPMENT

The European athecate hydroids and their medusae (Hydrozoa, Cnidaria): Filifera Part 4

(2015) P Schuchert   REVUE SUISSE DE ZOOLOGIE

Differential gene expression between functionally specialized polyps of the colonial hydrozoan Hydractinia symbiolongicarpus (Phylum Cnidaria)

(2014) Steven M Sanders et al.   BMC GENOMICS

Transcriptome analyses and differential gene expression in a non-model fish species with alternative mating tactics

(2014) Celia Schunter et al.   BMC GENOMICS

RBFOX and PTBP1 proteins regulate the alternative splicing of micro-exons in human brain transcripts

(2014) Yang I. Li et al.   GENOME RESEARCH

Comparative analysis of regulatory information and circuits across distant species

(2014) Alan P. Boyle et al.   NATURE

PNAS Plus: From the Cover: Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid

(2014) M. S. Pankey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

(2013) Ning Leng et al.   BIOINFORMATICS

Agalma: an automated phylogenomics workflow

(2013) Casey W Dunn et al.   BMC BIOINFORMATICS

Characterization of differential transcript abundance through time during Nematostella vectensis development

(2013) Rebecca Helm et al.   BMC GENOMICS

Phylogenetic Analysis of Gene Expression

(2013) C. W. Dunn et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Organ Evolution in Angiosperms Driven by Correlated Divergences of Gene Sequences and Expression Patterns

(2013) Ruolin Yang et al.   PLANT CELL

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

EVOLUTION OF LIFE CYCLE, COLONY MORPHOLOGY, AND HOST SPECIFICITY IN THE FAMILY HYDRACTINIIDAE (HYDROZOA, CNIDARIA)

(2012) Maria Pia Miglietta et al.   EVOLUTION

Molecular Signatures of the Three Stem Cell Lineages in Hydra and the Emergence of Stem Cell Function at the Base of Multicellularity

(2012) Georg Hemmrich et al.   MOLECULAR BIOLOGY AND EVOLUTION

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Induced stem cell neoplasia in a cnidarian by ectopic expression of a POU domain transcription factor

(2011) R. C. Millane et al.   DEVELOPMENT

A heat shock protein and Wnt signaling crosstalk during axial patterning and stem cell proliferation

(2011) David J. Duffy et al.   DEVELOPMENTAL BIOLOGY

Functional roles of Notch signaling in the cnidarian Nematostella vectensis

(2011) Heather Marlow et al.   DEVELOPMENTAL BIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

The First Insight into the Tissue Specific Taxus Transcriptome via Illumina Second Generation Sequencing

(2011) Da Cheng Hao et al.   PLoS One

Differential Gene Expression in the Siphonophore Nanomia bijuga (Cnidaria) Assessed with Multiple Next-Generation Sequencing Workflows

(2011) Stefan Siebert et al.   PLoS One

Wnt signaling promotes oral but suppresses aboral structures in Hydractinia metamorphosis and regeneration

(2010) D. J. Duffy et al.   DEVELOPMENT

β-catenin plays a central role in setting up the head organizer in hydra

(2010) Lydia Gee et al.   DEVELOPMENTAL BIOLOGY

Assembly algorithms for next-generation sequencing data

(2010) Jason R. Miller et al.   GENOMICS

Evolution of Calcium-carbonate Skeletons in the Hydractiniidae

(2010) M. P. Miglietta et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Character Evolution in Hydrozoa (phylum Cnidaria)

(2010) Paulyn Cartwright et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Multiple Wnts are involved in Hydra organizer formation and regeneration

(2009) Tobias Lengfeld et al.   DEVELOPMENTAL BIOLOGY

Life cycle strategy, species richness and distribution in marine Hydrozoa (Cnidaria: Medusozoa)

(2009) Mark J. Gibbons et al.   JOURNAL OF BIOGEOGRAPHY

Are Hox Genes Ancestrally Involved in Axial Patterning? Evidence from the Hydrozoan Clytia hemisphaerica (Cnidaria)

(2009) Roxane Chiori et al.   PLoS One

Molecular Phylogenetics of Thecata (Hydrozoa, Cnidaria) Reveals Long-Term Maintenance of Life History Traits despite High Frequency of Recent Character Changes

(2009) Lucas Leclère et al.   SYSTEMATIC BIOLOGY

Reconciling genealogical and morphological species in a worldwide study of the Family Hydractiniidae (Cnidaria, Hydrozoa)

(2009) Maria Pia Miglietta et al.   ZOOLOGICA SCRIPTA

A maternally localised Wnt ligand required for axial patterning in the cnidarian Clytia hemisphaerica

(2008) T. Momose et al.   DEVELOPMENT

Three distinct RNA localization mechanisms contribute to oocyte polarity establishment in the cnidarian Clytia hemisphærica

(2008) Aldine Amiel et al.   DEVELOPMENTAL BIOLOGY

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY

Ordered progression of nematogenesis from stem cells through differentiation stages in the tentacle bulb of Clytia hemisphaerica (Hydrozoa, Cnidaria)

(2007) Elsa Denker et al.   DEVELOPMENTAL BIOLOGY