Rumen bacterial community structure impacts feed efficiency in beef cattle

The Structural and Functional Capacity of Ruminal and Cecal Microbiota in Growing Cattle Was Unaffected by Dietary Supplementation of Linseed Oil and Nitrate

(2017) Milka Popova et al.   Frontiers in Microbiology

Specific microbiome-dependent mechanisms underlie the energy harvest efficiency of ruminants

(2016) Sheerli Kruger Ben Shabat et al.   ISME Journal

Does the rumen microbiome play a role in feed efficiency of beef cattle?1

(2016) F. Li et al.   JOURNAL OF ANIMAL SCIENCE

Rumen bacterial communities can be acclimated faster to high concentrate diets than currently implemented feedlot programs

(2016) C.L. Anderson et al.   JOURNAL OF APPLIED MICROBIOLOGY

Rumen Bacterial Community Composition in Holstein and Jersey Cows Is Different under Same Dietary Condition and Is Not Affected by Sampling Method

(2016) Henry A. Paz et al.   Frontiers in Microbiology

Estimation of breed-specific heterosis effects for birth, weaning, and yearling weight in cattle1

(2015) L. N. Schiermiester et al.   JOURNAL OF ANIMAL SCIENCE

Rumen Microbiome from Steers Differing in Feed Efficiency

(2015) Phillip R. Myer et al.   PLoS One

An Expanded Genomic Representation of the Phylum Cyanobacteria

(2014) Rochelle M. Soo et al.   Genome Biology and Evolution

Characterization of the Core Rumen Microbiome in Cattle during Transition from Forage to Concentrate as Well as during and after an Acidotic Challenge

(2014) Renee M. Petri et al.   PLoS One

Relationship between the Rumen Microbiome and Residual Feed Intake-Efficiency of Brahman Bulls Stocked on Bermudagrass Pastures

(2014) Joshua C. McCann et al.   PLoS One

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genome-wide association analyses for growth and feed efficiency traits in beef cattle1

(2013) D. Lu et al.   JOURNAL OF ANIMAL SCIENCE

CELL BIOLOGY SYMPOSIUM: Genetics of feed efficiency in dairy and beef cattle1

(2013) D. P. Berry et al.   JOURNAL OF ANIMAL SCIENCE

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria

(2013) Sara C Di Rienzi et al.   eLife

Effect of Phenotypic Residual Feed Intake and Dietary Forage Content on the Rumen Microbial Community of Beef Cattle

(2012) Ciara A. Carberry et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Composition and Similarity of Bovine Rumen Microbiota across Individual Animals

(2012) Elie Jami et al.   PLoS One

Impact of Feed Efficiency and Diet on Adaptive Variations in the Bacterial Community in the Rumen Fluid of Cattle

(2011) Emma Hernandez-Sanabria et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

The environmental impact of beef production in the United States: 1977 compared with 2007

(2011) J. L. Capper   JOURNAL OF ANIMAL SCIENCE

Partial-genome evaluation of postweaning feed intake and efficiency of crossbred beef cattle1,2

(2011) W. M. Snelling et al.   JOURNAL OF ANIMAL SCIENCE

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Correlation of Particular Bacterial PCR-Denaturing Gradient Gel Electrophoresis Patterns with Bovine Ruminal Fermentation Parameters and Feed Efficiency Traits

(2010) E. Hernandez-Sanabria et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Rumen Microbial Population Dynamics during Adaptation to a High-Grain Diet

(2010) S. C. Fernando et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The Glycobiome of the Rumen Bacterium Butyrivibrio proteoclasticus B316T Highlights Adaptation to a Polysaccharide-Rich Environment

(2010) William J. Kelly et al.   PLoS One

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparing environmental impacts for livestock products: A review of life cycle assessments

(2009) M. de Vries et al.   Livestock Science

How to evaluate models: Observed vs. predicted or predicted vs. observed?

(2008) Gervasio Piñeiro et al.   ECOLOGICAL MODELLING

Quantitative analysis of cellulose degradation and growth of cellulolytic bacteria in the rumen

(2008) James B. Russell et al.   FEMS MICROBIOLOGY ECOLOGY

Physiological basis for residual feed intake1

(2008) R. M. Herd et al.   JOURNAL OF ANIMAL SCIENCE

BOARD-INVITED REVIEW: Use of distillers by-products in the beef cattle feeding industry1

(2007) T. J. Klopfenstein et al.   JOURNAL OF ANIMAL SCIENCE