Characterizing disease-associated changes in post-translational modifications by mass spectrometry
出版年份 2018 全文链接
标题
Characterizing disease-associated changes in post-translational modifications by mass spectrometry
作者
关键词
-
出版物
Expert Review of Proteomics
Volume 15, Issue 3, Pages 245-258
出版商
Informa UK Limited
发表日期
2018-01-27
DOI
10.1080/14789450.2018.1433036
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- The crucial role of protein phosphorylation in cell signaling and its use as targeted therapy (Review)
- (2017) Fatima Ardito et al. INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE
- Targeted mass spectrometry: An emerging powerful approach to unblock the bottleneck in phosphoproteomics
- (2017) Nerea Osinalde et al. JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES
- Reversal of platinum drug resistance by the histone deacetylase inhibitor belinostat
- (2017) Kenneth Kin-Wah To et al. LUNG CANCER
- Characterization of the Molecular Mechanisms Underlying Glucose Stimulated Insulin Secretion from Isolated Pancreatic β-cells Using Post-translational Modification Specific Proteomics (PTMomics)
- (2017) Taewook Kang et al. MOLECULAR & CELLULAR PROTEOMICS
- Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS
- (2017) George Rosenberger et al. NATURE BIOTECHNOLOGY
- ActiveDriverDB: human disease mutations and genome variation in post-translational modification sites of proteins
- (2017) Michal Krassowski et al. NUCLEIC ACIDS RESEARCH
- TRIM31 is upregulated in hepatocellular carcinoma and promotes disease progression by inducing ubiquitination of TSC1–TSC2 complex
- (2017) P Guo et al. ONCOGENE
- SWATH-MS as a tool for biomarker discovery: From basic research to clinical applications
- (2017) Sandra Isabel Anjo et al. PROTEOMICS
- Spectral library-based glycopeptide analysis-detection of circulating galectin-3 binding protein in pancreatic cancer
- (2017) Eslam N. Nigjeh et al. Proteomics Clinical Applications
- Hydrogen bond based smart polymer for highly selective and tunable capture of multiply phosphorylated peptides
- (2017) Guangyan Qing et al. Nature Communications
- Protein SUMOylation modification and its associations with disease
- (2017) Yanfang Yang et al. Open Biology
- Deep Phospho- and Phosphotyrosine Proteomics Identified Active Kinases and Phosphorylation Networks in Colorectal Cancer Cell Lines Resistant to Cetuximab
- (2017) Yuichi Abe et al. Scientific Reports
- FLEXITau: Quantifying Post-translational Modifications of Tau Protein in Vitro and in Human Disease
- (2016) Waltraud Mair et al. ANALYTICAL CHEMISTRY
- Post-translational modifications of CD36 (SR-B2): Implications for regulation of myocellular fatty acid uptake
- (2016) Joost J.F.P. Luiken et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE
- Differential Mass Spectrometry Profiles of Tau Protein in the Cerebrospinal Fluid of Patients with Alzheimer’s Disease, Progressive Supranuclear Palsy, and Dementia with Lewy Bodies
- (2016) Nicolas R. Barthélemy et al. JOURNAL OF ALZHEIMERS DISEASE
- Human Achilles tendon glycation and function in diabetes
- (2016) Christian Couppé et al. JOURNAL OF APPLIED PHYSIOLOGY
- SWATH-MS Glycoproteomics Reveals Consequences of Defects in the Glycosylation Machinery
- (2016) Lucia F. Zacchi et al. MOLECULAR & CELLULAR PROTEOMICS
- Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder
- (2016) Yangyang Bian et al. Nature Chemical Biology
- OpenMS: a flexible open-source software platform for mass spectrometry data analysis
- (2016) Hannes L Röst et al. NATURE METHODS
- Evolution of a mass spectrometry-grade protease with PTM-directed specificity
- (2016) Duc T. Tran et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- High-performance hybrid Orbitrap mass spectrometers for quantitative proteome analysis: Observations and implications
- (2016) James C. Williamson et al. PROTEOMICS
- Understanding histone deacetylation in Huntington’s disease
- (2016) Luis Miguel Valor Oncotarget
- A novel mass spectrometric strategy “BEMAP” reveals Extensive O-linked protein glycosylation in Enterotoxigenic Escherichia coli
- (2016) Anders Boysen et al. Scientific Reports
- The Size of the Human Proteome: The Width and Depth
- (2016) Elena A. Ponomarenko et al. International Journal of Analytical Chemistry
- Ubiquitin phosphorylation in Parkinson’s disease: Implications for pathogenesis and treatment
- (2016) Lih-Shen Chin et al. Translational Neurodegeneration
- Crosstalk among proteome, acetylome and succinylome in colon cancer HCT116 cell treated with sodium dichloroacetate
- (2016) Danxi Zhu et al. Scientific Reports
- Nonenzymatic Protein Acetylation Detected by NAPPA Protein Arrays
- (2015) Adam S. Olia et al. ACS Chemical Biology
- Minimizing technical variation during sample preparation prior to label-free quantitative mass spectrometry
- (2015) E. Scheerlinck et al. ANALYTICAL BIOCHEMISTRY
- Comparing Multistep Immobilized Metal Affinity Chromatography and Multistep TiO2 Methods for Phosphopeptide Enrichment
- (2015) Xiaoshan Yue et al. ANALYTICAL CHEMISTRY
- Chemical reporters for exploring protein acylation
- (2015) Emmanuelle Thinon et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- TGFβ-induced phosphorylation of Par6 promotes migration and invasion in prostate cancer cells
- (2015) Y Mu et al. BRITISH JOURNAL OF CANCER
- Analysis of acetylation stoichiometry suggests that SIRT3 repairs nonenzymatic acetylation lesions
- (2015) B. T. Weinert et al. EMBO JOURNAL
- Proteomic and Biochemical Studies of Lysine Malonylation Suggest Its Malonic Aciduria-associated Regulatory Role in Mitochondrial Function and Fatty Acid Oxidation
- (2015) Gozde Colak et al. MOLECULAR & CELLULAR PROTEOMICS
- Sequential Window Acquisition of all Theoretical Mass Spectra (SWATH) Analysis for Characterization and Quantification of Histone Post-translational Modifications
- (2015) Simone Sidoli et al. MOLECULAR & CELLULAR PROTEOMICS
- Opening a SWATH Window on Posttranslational Modifications: Automated Pursuit of Modified Peptides
- (2015) Andrew Keller et al. MOLECULAR & CELLULAR PROTEOMICS
- Deep, Quantitative Coverage of the Lysine Acetylome Using Novel Anti-acetyl-lysine Antibodies and an Optimized Proteomic Workflow
- (2015) Tanya Svinkina et al. MOLECULAR & CELLULAR PROTEOMICS
- Immobilized Metal Affinity Chromatography Coupled to Multiple Reaction Monitoring Enables Reproducible Quantification of Phospho-signaling
- (2015) Jacob J. Kennedy et al. MOLECULAR & CELLULAR PROTEOMICS
- High-throughput phosphoproteomics reveals in vivo insulin signaling dynamics
- (2015) Sean J Humphrey et al. NATURE BIOTECHNOLOGY
- Analysis of colorectal cancer glyco-secretome identifies laminin β-1 (LAMB1) as a potential serological biomarker for colorectal cancer
- (2015) Qifeng Lin et al. PROTEOMICS
- Recent advances in targeted proteomics for clinical applications
- (2015) Bruno Domon et al. Proteomics Clinical Applications
- Targeted methods for quantitative analysis of protein glycosylation
- (2015) Radoslav Goldman et al. Proteomics Clinical Applications
- Persistent human Borna disease virus infection modifies the acetylome of human oligodendroglia cells towards higher energy and transporter levels
- (2015) Xia Liu et al. VIROLOGY
- Engaging challenges in glycoproteomics: recent advances in MS-based glycopeptide analysis
- (2015) Venkata Kolli et al. Bioanalysis
- An Augmented Multiple-Protease-Based Human Phosphopeptide Atlas
- (2015) Piero Giansanti et al. Cell Reports
- Histone H3 Ser57 and Thr58 phosphorylation in the brain of 5XFAD mice
- (2015) Kyle W. Anderson et al. FEBS Open Bio
- Histone post-translational modifications in frontal cortex from human donors with Alzheimer’s disease
- (2015) Kyle W. Anderson et al. Clinical Proteomics
- Diabetes Induces Lysine Acetylation of Intermediary Metabolism Enzymes in the Kidney
- (2014) H. Kosanam et al. DIABETES
- Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes
- (2014) Iakes Ezkurdia et al. HUMAN MOLECULAR GENETICS
- Histone H1 Phosphorylation in Breast Cancer
- (2014) Sean W. Harshman et al. JOURNAL OF PROTEOME RESEARCH
- Kinetic Analysis of BCL11B Multisite Phosphorylation–Dephosphorylation and Coupled Sumoylation in Primary Thymocytes by Multiple Reaction Monitoring Mass Spectroscopy
- (2014) Walter K. Vogel et al. JOURNAL OF PROTEOME RESEARCH
- Neuronal process structure and growth proteins are targets of heavy PTM regulation during brain development
- (2014) Alistair V.G. Edwards et al. Journal of Proteomics
- Mass Spectrometric Analysis of the Cell Surface N-Glycoproteome by Combining Metabolic Labeling and Click Chemistry
- (2014) Johanna M. Smeekens et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- Absolute Quantitation of Glycosylation Site Occupancy Using Isotopically Labeled Standards and LC-MS
- (2014) Zhikai Zhu et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- Lysine Malonylation Is Elevated in Type 2 Diabetic Mouse Models and Enriched in Metabolic Associated Proteins
- (2014) Yipeng Du et al. MOLECULAR & CELLULAR PROTEOMICS
- Glycoproteomic Analysis of Prostate Cancer Tissues by SWATH Mass Spectrometry Discovers N-acylethanolamine Acid Amidase and Protein Tyrosine Kinase 7 as Signatures for Tumor Aggressiveness
- (2014) Yansheng Liu et al. MOLECULAR & CELLULAR PROTEOMICS
- Nonenzymatic Protein Acylation as a Carbon Stress Regulated by Sirtuin Deacylases
- (2014) Gregory R. Wagner et al. MOLECULAR CELL
- Acetylation dynamics and stoichiometry in Saccharomyces cerevisiae
- (2014) B. T. Weinert et al. Molecular Systems Biology
- Large-scale analysis of lysine SUMOylation by SUMO remnant immunoaffinity profiling
- (2014) Frédéric Lamoliatte et al. Nature Communications
- Ubiquitin pathways in neurodegenerative disease
- (2014) Graham Atkin et al. Frontiers in Molecular Neuroscience
- A Chemical Probe for Lysine Malonylation
- (2013) Xiucong Bao et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Proline-rich tyrosine kinase 2 and its phosphorylated form pY881 are novel prognostic markers for non-small-cell lung cancer progression and patients’ overall survival
- (2013) B-H Kuang et al. BRITISH JOURNAL OF CANCER
- Review: Glycation of human serum albumin
- (2013) Jeanethe Anguizola et al. CLINICA CHIMICA ACTA
- Mass spectrometric protein maps for biomarker discovery and clinical research
- (2013) Yansheng Liu et al. EXPERT REVIEW OF MOLECULAR DIAGNOSTICS
- Signal Transduction in Cerebral Arteries after Subarachnoid Hemorrhage—A Phosphoproteomic Approach
- (2013) Benjamin L Parker et al. JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM
- Quantitative Targeted Absolute Proteomics-Based Large-Scale Quantification of Proline-Hydroxylated α-Fibrinogen in Plasma for Pancreatic Cancer Diagnosis
- (2013) Toshihiro Yoneyama et al. JOURNAL OF PROTEOME RESEARCH
- Spatial and Temporal Effects in Protein Post-translational Modification Distributions in the Developing Mouse Brain
- (2013) Alistair V. G. Edwards et al. JOURNAL OF PROTEOME RESEARCH
- Alterations of Histone H1 Phosphorylation During Bladder Carcinogenesis
- (2013) Kelly H. Telu et al. JOURNAL OF PROTEOME RESEARCH
- Integrated proteomic analysis of post-translational modifications by serial enrichment
- (2013) Philipp Mertins et al. NATURE METHODS
- Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation
- (2013) Danielle L Swaney et al. NATURE METHODS
- The next level of complexity: Crosstalk of posttranslational modifications
- (2013) A. Saskia Venne et al. PROTEOMICS
- Lysine Succinylation Is a Frequently Occurring Modification in Prokaryotes and Eukaryotes and Extensively Overlaps with Acetylation
- (2013) Brian T. Weinert et al. Cell Reports
- Multiple Reaction Monitoring to Identify Site-Specific Troponin I Phosphorylated Residues in the Failing Human Heart
- (2012) Pingbo Zhang et al. CIRCULATION
- A Twist on Quantification
- (2012) Christopher I. Murray et al. CIRCULATION RESEARCH
- Identifying the CHO Secretome using Mucin-type O-Linked Glycosylation and Click-chemistry
- (2012) Peter G. Slade et al. JOURNAL OF PROTEOME RESEARCH
- Synaptic Protein Ubiquitination in Rat Brain Revealed by Antibody-based Ubiquitome Analysis
- (2012) Chan Hyun Na et al. JOURNAL OF PROTEOME RESEARCH
- A Strategy for Large-Scale Phosphoproteomics and SRM-Based Validation of Human Breast Cancer Tissue Samples
- (2012) Ryohei Narumi et al. JOURNAL OF PROTEOME RESEARCH
- Chemical Deamidation: A Common Pitfall in Large-Scale N-Linked Glycoproteomic Mass Spectrometry-Based Analyses
- (2012) Giuseppe Palmisano et al. JOURNAL OF PROTEOME RESEARCH
- Protein phosphorylation patterns in serum from schizophrenia patients and healthy controls
- (2012) Julian A.J. Jaros et al. Journal of Proteomics
- TiSH — a robust and sensitive global phosphoproteomics strategy employing a combination of TiO2, SIMAC, and HILIC
- (2012) Kasper Engholm-Keller et al. Journal of Proteomics
- A Novel Method for the Simultaneous Enrichment, Identification, and Quantification of Phosphopeptides and Sialylated Glycopeptides Applied to a Temporal Profile of Mouse Brain Development
- (2012) Giuseppe Palmisano et al. MOLECULAR & CELLULAR PROTEOMICS
- Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass
- (2012) Lou K. Povlsen et al. NATURE CELL BIOLOGY
- Targeted proteomics for quantification of histone acetylation in Alzheimer's disease
- (2012) Kangling Zhang et al. PROTEOMICS
- Post-translational modification: nature's escape from genetic imprisonment and the basis for dynamic information encoding
- (2012) Sudhakaran Prabakaran et al. Wiley Interdisciplinary Reviews-Systems Biology and Medicine
- Biobanking perspective on challenges in sample handling, collection, processing, storage, analysis and retrieval for genomics, transcriptomics and proteomics data
- (2011) Farid E Ahmed Analytical Methods
- Unraveling the Ubiquitome of the Human Malaria Parasite
- (2011) Nadia Ponts et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Human proteome analysis by using reversed phase monolithic silica capillary columns with enhanced sensitivity
- (2011) Mio Iwasaki et al. JOURNAL OF CHROMATOGRAPHY A
- Universal and Confident Phosphorylation Site Localization Using phosphoRS
- (2011) Thomas Taus et al. JOURNAL OF PROTEOME RESEARCH
- Correct Interpretation of Comprehensive Phosphorylation Dynamics Requires Normalization by Protein Expression Changes
- (2011) Ronghu Wu et al. MOLECULAR & CELLULAR PROTEOMICS
- QuantitativeN-linked Glycoproteomics of Myocardial Ischemia and Reperfusion Injury Reveals Early Remodeling in the Extracellular Environment
- (2011) Benjamin L. Parker et al. MOLECULAR & CELLULAR PROTEOMICS
- Characterization of ubiquitination dependent dynamics in growth factor receptor signaling by quantitative proteomics
- (2011) Vyacheslav Akimov et al. Molecular BioSystems
- Targeting Tyrosine Phosphorylation of PCNA Inhibits Prostate Cancer Growth
- (2011) H. Zhao et al. MOLECULAR CANCER THERAPEUTICS
- Systematic and Quantitative Assessment of the Ubiquitin-Modified Proteome
- (2011) Woong Kim et al. MOLECULAR CELL
- Site-specific characterization of threonine, serine, and tyrosine glycosylations of amyloid precursor protein/amyloid -peptides in human cerebrospinal fluid
- (2011) A. Halim et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Skyline: an open source document editor for creating and analyzing targeted proteomics experiments
- (2010) Brendan MacLean et al. BIOINFORMATICS
- Value of Using Multiple Proteases for Large-Scale Mass Spectrometry-Based Proteomics
- (2010) Danielle L. Swaney et al. JOURNAL OF PROTEOME RESEARCH
- Undesirable Charge-Enhancement of Isobaric Tagged Phosphopeptides Leads to Reduced Identification Efficiency
- (2010) Tine E. Thingholm et al. JOURNAL OF PROTEOME RESEARCH
- Purification and Identification ofO-GlcNAc-Modified Peptides Using Phosphate-Based Alkyne CLICK Chemistry in Combination with Titanium Dioxide Chromatography and Mass Spectrometry
- (2010) Benjamin L. Parker et al. JOURNAL OF PROTEOME RESEARCH
- Confident Phosphorylation Site Localization Using the Mascot Delta Score
- (2010) Mikhail M. Savitski et al. MOLECULAR & CELLULAR PROTEOMICS
- Site-Specific Identification of SUMO-2 Targets in Cells Reveals an Inverted SUMOylation Motif and a Hydrophobic Cluster SUMOylation Motif
- (2010) Ivan Matic et al. MOLECULAR CELL
- Options and considerations when selecting a quantitative proteomics strategy
- (2010) Bruno Domon et al. NATURE BIOTECHNOLOGY
- Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis
- (2010) J. V. Olsen et al. Science Signaling
- Anti-angiogenic tyrosine kinase inhibitors: what is their mechanism of action?
- (2009) Kristy J. Gotink et al. ANGIOGENESIS
- Deficits in Syntaxin 1 Phosphorylation in Schizophrenia Prefrontal Cortex
- (2009) Max A. Castillo et al. BIOLOGICAL PSYCHIATRY
- The Human Scavenger Receptor CD36
- (2009) Sarah J. Hoosdally et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Repeatability and Reproducibility in Proteomic Identifications by Liquid Chromatography−Tandem Mass Spectrometry
- (2009) David L. Tabb et al. JOURNAL OF PROTEOME RESEARCH
- Bisphosphonates: Mechanism of Action and Role in Clinical Practice
- (2009) Matthew T. Drake et al. MAYO CLINIC PROCEEDINGS
- A role for the TGF -Par6 polarity pathway in breast cancer progression
- (2009) A. M. Viloria-Petit et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evidence for phosphorylation of serine 753 in CFTR using a novel metal-ion affinity resin and matrix-assisted laser desorption mass spectrometry
- (2009) David C. A. Neville et al. PROTEIN SCIENCE
- Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions
- (2009) C. Choudhary et al. SCIENCE
- Advances in Quantitative Hepcidin Measurements by Time-of-Flight Mass Spectrometry
- (2008) Dorine W. Swinkels et al. PLoS One
- Identification of phosphoproteins in kidney tissues from patients with autosomal dominant polycystic kidney disease
- (2008) Yawei Liu et al. Proteomics Clinical Applications
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreDiscover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversation