标题
Coarse-grained simulation of DNA using LAMMPS
作者
关键词
Topical issue: Advances in Computational Methods for Soft Matter Systems
出版物
EUROPEAN PHYSICAL JOURNAL E
Volume 41, Issue 5, Pages -
出版商
Springer Nature
发表日期
2018-05-10
DOI
10.1140/epje/i2018-11669-8
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Multiscale simulation of DNA
- (2016) Pablo D Dans et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- A single nucleotide resolution model for large-scale simulations of double stranded DNA
- (2016) Y. A. G. Fosado et al. Soft Matter
- New Langevin and gradient thermostats for rigid body dynamics
- (2015) R. L. Davidchack et al. JOURNAL OF CHEMICAL PHYSICS
- Introducing improved structural properties and salt dependence into a coarse-grained model of DNA
- (2015) Benedict E. K. Snodin et al. JOURNAL OF CHEMICAL PHYSICS
- Coarse-Grained Ions for Nucleic Acid Modeling
- (2015) Daniel M. Hinckley et al. Journal of Chemical Theory and Computation
- Martini Coarse-Grained Force Field: Extension to DNA
- (2015) Jaakko J. Uusitalo et al. Journal of Chemical Theory and Computation
- Coarse-Grained Simulation Study of Sequence Effects on DNA Hybridization in a Concentrated Environment
- (2015) Cade B. Markegard et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Gels of DNA Nanostars Never Crystallize
- (2014) Lorenzo Rovigatti et al. ACS Nano
- Models for twistable elastic polymers in Brownian dynamics, and their implementation for LAMMPS
- (2014) C. A. Brackley et al. JOURNAL OF CHEMICAL PHYSICS
- DNA Duplex Formation with a Coarse-Grained Model
- (2014) Maciej Maciejczyk et al. Journal of Chemical Theory and Computation
- A Coarse-Grained Model of Unstructured Single-Stranded DNA Derived from Atomistic Simulation and Single-Molecule Experiment
- (2014) Christopher Maffeo et al. Journal of Chemical Theory and Computation
- A Coarse-Grained DNA Model Parameterized from Atomistic Simulations by Inverse Monte Carlo
- (2014) Nikolay Korolev et al. Polymers
- Optimizing DNA Nanotechnology through Coarse-Grained Modeling: A Two-Footed DNA Walker
- (2013) Thomas E. Ouldridge et al. ACS Nano
- GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit
- (2013) Sander Pronk et al. BIOINFORMATICS
- An experimentally-informed coarse-grained 3-site-per-nucleotide model of DNA: Structure, thermodynamics, and dynamics of hybridization
- (2013) Daniel M. Hinckley et al. JOURNAL OF CHEMICAL PHYSICS
- Sequence-dependent thermodynamics of a coarse-grained DNA model
- (2012) Petr Šulc et al. JOURNAL OF CHEMICAL PHYSICS
- Salt dependence of the radius of gyration and flexibility of single-stranded DNA in solution probed by small-angle x-ray scattering
- (2012) Adelene Y. L. Sim et al. PHYSICAL REVIEW E
- Self-assembly of short DNA duplexes: from a coarse-grained model to experiments through a theoretical link
- (2012) Cristiano De Michele et al. Soft Matter
- Recent successes in coarse-grained modeling of DNA
- (2012) Davit A. Potoyan et al. Wiley Interdisciplinary Reviews-Computational Molecular Science
- Structural, mechanical, and thermodynamic properties of a coarse-grained DNA model
- (2011) Thomas E. Ouldridge et al. JOURNAL OF CHEMICAL PHYSICS
- Ionic strength-dependent persistence lengths of single-stranded RNA and DNA
- (2011) H. Chen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The atomistic simulation of DNA
- (2011) Charles A. Laughton et al. Wiley Interdisciplinary Reviews-Computational Molecular Science
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