Models for twistable elastic polymers in Brownian dynamics, and their implementation for LAMMPS

Supercoiling in DNA and chromatin

(2013) Nick Gilbert et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures

(2013) Catherine Naughton et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Models that include supercoiling of topological domains reproduce several known features of interphase chromosomes

(2013) Fabrizio Benedetti et al.   NUCLEIC ACIDS RESEARCH

High-Resolution Mapping of the Spatial Organization of a Bacterial Chromosome

(2013) T. B. K. Le et al.   SCIENCE

The torsional state of DNA within the chromosome

(2011) Joaquim Roca   CHROMOSOMA

Magnetic torque tweezers: measuring torsional stiffness in DNA and RecA-DNA filaments

(2010) Jan Lipfert et al.   NATURE METHODS

Dynamics of filaments and membranes in a viscous fluid

(2010) Thomas R. Powers   REVIEWS OF MODERN PHYSICS

The Role of DNA Twist in the Packaging of Viral Genomes

(2008) Geoffrey C. Rollins et al.   BIOPHYSICAL JOURNAL

Abrupt Buckling Transition Observed during the Plectoneme Formation of Individual DNA Molecules

(2008) Scott Forth et al.   PHYSICAL REVIEW LETTERS