Development and implementation of eco-genomic tools for aquatic ecosystem biomonitoring: the SYNAQUA French-Swiss program

Do we similarly assess diversity with microscopy and high-throughput sequencing? Case of microalgae in lakes

(2018) Frédéric Rimet et al.   ORGANISMS DIVERSITY & EVOLUTION

Avoiding quantification bias in metabarcoding: Application of a cell biovolume correction factor in diatom molecular biomonitoring

(2018) Valentin Vasselon et al.   Methods in Ecology and Evolution

Predicting the Ecological Quality Status of Marine Environments from eDNA Metabarcoding Data Using Supervised Machine Learning

(2017) Tristan Cordier et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Freshwater biomonitoring in the Information Age

(2017) François Keck et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Metabarcoding of lake benthic diatoms: from structure assemblages to ecological assessment

(2017) S. F. Rivera et al.   HYDROBIOLOGIA

Cytochrome c oxidase barcodes for aquatic oligochaete identification: development of a Swiss reference database

(2017) Régis Vivien et al.   PeerJ

R-Syst::diatom: an open-access and curated barcode database for diatoms and freshwater monitoring

(2016) Frédéric Rimet et al.   Database-The Journal of Biological Databases and Curation

Environmental Monitoring: Inferring the Diatom Index from Next-Generation Sequencing Data

(2015) Joana Amorim Visco et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Molecular Barcoding of Aquatic Oligochaetes: Implications for Biomonitoring

(2015) Régis Vivien et al.   PLoS One

A next-generation sequencing approach to river biomonitoring using benthic diatoms

(2014) Lenaïg Kermarrec et al.   Freshwater Science

Use of oligochaete communities for assessing the quality of sediments in watercourses of the Geneva area (Switzerland) and Artois-Picardie basin (France): proposition of heavy metal toxicity thresholds

(2014) Régis Vivien et al.   ECOHYDROLOGY & HYDROBIOLOGY

Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms

(2013) L. Kermarrec et al.   Molecular Ecology Resources

First Evidence of the Existence of Semi-Cryptic Species and of a Phylogeographic Structure in the Gomphonema parvulum (Kützing) Kützing Complex (Bacillariophyta)

(2013) Lenaïg Kermarrec et al.   PROTIST

From research to operational biomonitoring of freshwaters: a suggested conceptual framework and practical solutions

(2013) Michel Lafont et al.   ECOHYDROLOGY & HYDROBIOLOGY

Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing

(2012) DONALD J. BAIRD et al.   MOLECULAR ECOLOGY

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

State of the World's Freshwater Ecosystems: Physical, Chemical, and Biological Changes

(2011) Stephen R. Carpenter et al.   Annual Review of Environment and Resources

Recent views on river pollution and diatoms

(2011) Frédéric Rimet   HYDROBIOLOGIA

Second-generation sequencing derived insights into the temporal biodiversity dynamics of freshwater protists

(2010) SIMON CREER   MOLECULAR ECOLOGY

Global threats to human water security and river biodiversity

(2010) C. J. Vörösmarty et al.   NATURE

Refinement of biomonitoring of urban water courses by combining descriptive and ecohydrological approaches

(2009) Michel Lafont et al.   ECOHYDROLOGY & HYDROBIOLOGY

Improvements of the Biological Diatom Index (BDI): Description and efficiency of the new version (BDI-2006)

(2008) M. Coste et al.   ECOLOGICAL INDICATORS