Metatranscriptome analysis reveals environmental and diel regulation of a Heterosigma akashiwo (raphidophyceae) bloom

Abundant and rare picoeukaryotic sub-communities present contrasting patterns in the epipelagic waters of marginal seas in the northwestern Pacific Ocean

(2017) Wenxue Wu et al.   ENVIRONMENTAL MICROBIOLOGY

Transcriptional response of the harmful raphidophyte Heterosigma akashiwo to nitrate and phosphate stress

(2017) Sheean T. Haley et al.   HARMFUL ALGAE

Transcriptomic and microRNAomic profiling reveals multi-faceted mechanisms to cope with phosphate stress in a dinoflagellate

(2017) Xinguo Shi et al.   ISME Journal

Nutrients structure changes impact the competition and succession between diatom and dinoflagellate in the East China Sea

(2017) Yuping Zhou et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Light intensity impacts the production of biofuel intermediates in Heterosigma akashiwo growing on simulated flue gas containing carbon dioxide and nitric oxide

(2016) Colleen M. Bianco et al.   BIORESOURCE TECHNOLOGY

Molecular insights into a dinoflagellate bloom

(2016) Weida Gong et al.   ISME Journal

The evolution of silicon transporters in diatoms

(2016) Colleen A. Durkin et al.   JOURNAL OF PHYCOLOGY

Phosphorus physiological ecology and molecular mechanisms in marine phytoplankton

(2016) Senjie Lin et al.   JOURNAL OF PHYCOLOGY

Probing the evolution, ecology and physiology of marine protists using transcriptomics

(2016) David A. Caron et al.   NATURE REVIEWS MICROBIOLOGY

Cryptophyte farming by symbiotic ciliate host detected in situ

(2016) Dajun Qiu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative Transcriptomic Analysis Reveals Novel Insights into the Adaptive Response of Skeletonema costatum to Changing Ambient Phosphorus

(2016) Shu-Feng Zhang et al.   Frontiers in Microbiology

Metatranscriptome profiling reveals versatile N-nutrient utilization, CO2 limitation, oxidative stress, and active toxin production in an Alexandrium fundyense bloom

(2015) Yunyun Zhuang et al.   HARMFUL ALGAE

Harmful algal blooms and climate change: Learning from the past and present to forecast the future

(2015) Mark L. Wells et al.   HARMFUL ALGAE

Effects of phosphorus deficiency and adenosine 5′-triphosphate (ATP) on growth and cell cycle of the dinoflagellate Prorocentrum donghaiense

(2015) Meizhen Li et al.   HARMFUL ALGAE

A hierarchy of conceptual models of red-tide generation: Nutrition, behavior, and biological interactions

(2015) Hae Jin Jeong et al.   HARMFUL ALGAE

Growth and alkaline phosphatase activity of Chattonella marina and Heterosigma akashiwo in response to phosphorus limitation

(2015) Zhao-Hui Wang et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

Diurnal vertical migration rhythms and their photoresponse in four phytoflagellates causing harmful algal blooms

(2015) Tomoyuki Shikata et al.   LIMNOLOGY AND OCEANOGRAPHY

The nature of the CO2-concentrating mechanisms in a marine diatom,Thalassiosira pseudonana

(2015) Romain Clement et al.   NEW PHYTOLOGIST

Cyst morphology and germination inHeterosigma akashiwo(Raphidophyceae)

(2015) Joo-Hwan Kim et al.   PHYCOLOGIA

An Improved DNA Extraction Method for Efficient and Quantitative Recovery of Phytoplankton Diversity in Natural Assemblages

(2015) Jian Yuan et al.   PLoS One

Metatranscriptome analyses indicate resource partitioning between diatoms in the field

(2015) Harriet Alexander et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Changes in gene expression of Prymnesium parvum induced by nitrogen and phosphorus limitation

(2015) Zhenfeng Liu et al.   Frontiers in Microbiology

Screening for Suitable Reference Genes for Quantitative Real-Time PCR in Heterosigma akashiwo (Raphidophyceae)

(2015) Nanjing Ji et al.   PLoS One

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Evidence for a Regulatory Role of Diatom Silicon Transporters in Cellular Silicon Responses

(2014) Roshan P. Shrestha et al.   EUKARYOTIC CELL

Nitrogen uptake kinetics in field populations and cultured strains of Karenia brevis

(2014) Lynn Killberg-Thoreson et al.   HARMFUL ALGAE

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing

(2014) Patrick J. Keeling et al.   PLOS BIOLOGY

Expression of a xanthine permease and phosphate transporter in cultures and field populations of the harmful algaAureococcus anophagefferens: tracking nutritional deficiency during brown tides

(2013) Louie L. Wurch et al.   ENVIRONMENTAL MICROBIOLOGY

The photobiology ofHeterosigma akashiwo. Photoacclimation, diurnal periodicity, and its ability to rapidly exploit exposure to high light

(2013) Sebastian J. Hennige et al.   JOURNAL OF PHYCOLOGY

AUREOCHROME1a-Mediated Induction of the Diatom-Specific CyclindsCYC2Controls the Onset of Cell Division in Diatoms (Phaeodactylum tricornutum)

(2013) Marie J.J. Huysman et al.   PLANT CELL

Genome-wide diel growth state transitions in the diatom Thalassiosira pseudonana

(2013) J. Ashworth et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proof that Dinoflagellate Spliced Leader (DinoSL) is a Useful Hook for Fishing Dinoflagellate Transcripts from Mixed Microbial Samples: Symbiodinium kawagutii as a Case Study

(2013) Huan Zhang et al.   PROTIST

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Alkaline phosphatase gene sequence characteristics and transcriptional regulation by phosphate limitation in Karenia brevis (Dinophyceae)

(2012) Xin Lin et al.   HARMFUL ALGAE

Competitive interaction between diatom Skeletonema costatum and dinoflagellate Prorocentrum donghaiense in laboratory culture

(2012) Jiangtao Wang et al.   JOURNAL OF PLANKTON RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

The Transcriptome and Proteome of the Diatom Thalassiosira pseudonana Reveal a Diverse Phosphorus Stress Response

(2012) Sonya T. Dyhrman et al.   PLoS One

Progress in Understanding Harmful Algal Blooms: Paradigm Shifts and New Technologies for Research, Monitoring, and Management

(2011) Donald M. Anderson et al.   Annual Review of Marine Science

Utilization of dissolved organic phosphorus by different groups of phytoplankton taxa

(2011) Zhao-hui Wang et al.   HARMFUL ALGAE

Mixotrophy in Red Tide Algae Raphidophytes1

(2011) HAE JIN JEONG   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Avoidance, movement, and mortality: The interactions between a protistan grazer andHeterosigma akashiwo, a harmful algal bloom species

(2011) Elizabeth L. Harvey et al.   LIMNOLOGY AND OCEANOGRAPHY

Evolution and metabolic significance of the urea cycle in photosynthetic diatoms

(2011) Andrew E. Allen et al.   NATURE

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Proteome Changes Driven by Phosphorus Deficiency and Recovery in the Brown Tide-Forming Alga Aureococcus anophagefferens

(2011) Louie L. Wurch et al.   PLoS One

Genomic understanding of dinoflagellates

(2011) Senjie Lin   RESEARCH IN MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Phytoplankton community at warm eddies in the northern South China Sea in winter 2003/2004

(2010) Bangqin Huang et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Nutrient-regulated transcriptional responses in the brown tide-forming alga Aureococcus anophagefferens

(2010) Louie L. Wurch et al.   ENVIRONMENTAL MICROBIOLOGY

Expression and standardized measurement of hemolytic activity in Heterosigma akashiwo

(2010) Crystal Ling et al.   HARMFUL ALGAE

Genome-wide analysis of diel gene expression in the unicellular N2-fixing cyanobacterium Crocosphaera watsonii WH 8501

(2010) Tuo Shi et al.   ISME Journal

Freshwater Perkinsea and marine-freshwater colonizations revealed by pyrosequencing and phylogeny of environmental rDNA

(2010) Jon Bråte et al.   ISME Journal

PHOSPHATE ACCUMULATION AND METABOLISM BY HETEROSIGMA AKASHIWO (RAPHIDOPHYCEAE) DURING DIEL VERTICAL MIGRATION IN A STRATIFIED MICROCOSM1

(2010) Masataka Watanabe et al.   JOURNAL OF PHYCOLOGY

Factors influencing the initiation of blooms of the raphidophyte Heterosigma akashiwo and the diatom Skeletonema costatum in a port in Japan

(2010) Tomoyuki Shikata et al.   LIMNOLOGY AND OCEANOGRAPHY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Dissection of local and systemic transcriptional responses to phosphate starvation in Arabidopsis

(2010) Marie-Christine Thibaud et al.   PLANT JOURNAL

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Extracellular polysaccharide-protein complexes of a harmful alga mediate the allelopathic control it exerts within the phytoplankton community

(2009) Yasuhiro Yamasaki et al.   ISME Journal

NITRATE REDUCTASE (NR1) SEQUENCE AND EXPRESSION IN THE HARMFUL ALGA HETEROSIGMA AKASHIWO (RAPHIDOPHYCEAE)1

(2009) Kathryn J. Coyne   JOURNAL OF PHYCOLOGY

Phytoplankton in the ocean use non-phosphorus lipids in response to phosphorus scarcity

(2009) Benjamin A. S. Van Mooy et al.   NATURE

Growth dynamics ofHeterosigma akashiwo(Raphidophyceae) in Hakata Bay, Japan

(2008) Tomoyuki Shikata et al.   EUROPEAN JOURNAL OF PHYCOLOGY

A comparison of future increased CO2 and temperature effects on sympatric Heterosigma akashiwo and Prorocentrum minimum

(2007) Fei-Xue Fu et al.   HARMFUL ALGAE