Systematic comparison of small RNA library preparation protocols for next-generation sequencing

Small RNA Library Preparation Method for Next-Generation Sequencing Using Chemical Modifications to Prevent Adapter Dimer Formation

(2016) Sabrina Shore et al.   PLoS One

DASHR: database of small human noncoding RNAs

(2015) Yuk Yee Leung et al.   NUCLEIC ACIDS RESEARCH

Addressing Bias in Small RNA Library Preparation for Sequencing: A New Protocol Recovers MicroRNAs that Evade Capture by Current Methods

(2015) Jeanette Baran-Gale et al.   Frontiers in Genetics

Bias in Ligation-Based Small RNA Sequencing Library Construction Is Determined by Adaptor and RNA Structure

(2015) Ryan T. Fuchs et al.   PLoS One

Evaluating bias-reducing protocols for RNA sequencing library preparation

(2014) Thomas J Jackson et al.   BMC GENOMICS

Library preparation methods for next-generation sequencing: Tone down the bias

(2014) Erwin L. van Dijk et al.   EXPERIMENTAL CELL RESEARCH

Elimination of Ligation Dependent Artifacts in T4 RNA Ligase to Achieve High Efficiency and Low Bias MicroRNA Capture

(2014) Yunke Song et al.   PLoS One

Small RNA Profile in Moso Bamboo Root and Leaf Obtained by High Definition Adapters

(2014) Ping Xu et al.   PLoS One

Biases in small RNA deep sequencing data

(2013) Carsten A. Raabe et al.   NUCLEIC ACIDS RESEARCH

High-efficiency RNA cloning enables accurate quantification of miRNA expression by deep sequencing

(2013) Zhaojie Zhang et al.   GENOME BIOLOGY

Structural bias in T4 RNA ligase-mediated 3′-adapter ligation

(2012) Fanglei Zhuang et al.   NUCLEIC ACIDS RESEARCH

A cost-effective method for Illumina small RNA-Seq library preparation using T4 RNA ligase 1 adenylated adapters

(2012) Yun-Ru Chen et al.   Plant Methods

Optimal enzymes for amplifying sequencing libraries

(2011) Michael A Quail et al.   NATURE METHODS

Identification and remediation of biases in the activity of RNA ligases in small-RNA deep sequencing

(2011) Anitha D. Jayaprakash et al.   NUCLEIC ACIDS RESEARCH

RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries

(2011) M. Hafner et al.   RNA

A bias-reducing strategy in profiling small RNAs using Solexa

(2011) G. Sun et al.   RNA

Reduction of non-insert sequence reads by dimer eliminator LNA oligonucleotide for small RNA deep sequencing

(2010) Mitsuoki Kawano et al.   BIOTECHNIQUES

Optimization of enzymatic reaction conditions for generating representative pools of cDNA from small RNA

(2010) D. B. Munafo et al.   RNA

Small silencing RNAs: an expanding universe

(2009) Megha Ghildiyal et al.   NATURE REVIEWS GENETICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY