A comparison of methods for estimating substitution rates from ancient DNA sequence data
出版年份 2018 全文链接
标题
A comparison of methods for estimating substitution rates from ancient DNA sequence data
作者
关键词
Ancient DNA, Tip dating, Least-squares dating, Bayesian phylogenetics, Substitution rate, Mitogenomes
出版物
BMC EVOLUTIONARY BIOLOGY
Volume 18, Issue 1, Pages -
出版商
Springer Nature
发表日期
2018-05-16
DOI
10.1186/s12862-018-1192-3
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Inferences from tip-calibrated phylogenies: a review and a practical guide
- (2016) Adrien Rieux et al. MOLECULAR ECOLOGY
- The Performance of the Date-Randomization Test in Phylogenetic Analyses of Time-Structured Virus Data
- (2015) Sebastián Duchêne et al. MOLECULAR BIOLOGY AND EVOLUTION
- Fast Dating Using Least-Squares Criteria and Algorithms
- (2015) Thu-Hien To et al. SYSTEMATIC BIOLOGY
- Measurably evolving pathogens in the genomic era
- (2015) Roman Biek et al. TRENDS IN ECOLOGY & EVOLUTION
- The effect of genetic structure on molecular dating and tests for temporal signal
- (2015) Gemma G. R. Murray et al. Methods in Ecology and Evolution
- Prolonged decay of molecular rate estimates for metazoan mitochondrial DNA
- (2015) Martyna Molak et al. PeerJ
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Improved Calibration of the Human Mitochondrial Clock Using Ancient Genomes
- (2014) Adrien Rieux et al. MOLECULAR BIOLOGY AND EVOLUTION
- Empirical calibrated radiocarbon sampler: a tool for incorporating radiocarbon-date and calibration error into Bayesian phylogenetic analyses of ancient DNA
- (2014) Martyna Molak et al. Molecular Ecology Resources
- Tree imbalance causes a bias in phylogenetic estimation of evolutionary timescales using heterochronous sequences
- (2014) David Duchêne et al. Molecular Ecology Resources
- Simulating and detecting autocorrelation of molecular evolutionary rates among lineages
- (2014) Simon Y. W. Ho et al. Molecular Ecology Resources
- Ancient DNA: the first three decades
- (2014) E. Hagelberg et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
- (2014) Remco Bouckaert et al. PLoS Computational Biology
- Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse
- (2013) Ludovic Orlando et al. NATURE
- Complete Mitochondrial Genomes of Ancient Canids Suggest a European Origin of Domestic Dogs
- (2013) O. Thalmann et al. SCIENCE
- Neolithic mitochondrial haplogroup H genomes and the genetic origins of Europeans
- (2013) Paul Brotherton et al. Nature Communications
- Complete mitochondrial genomes and a novel spatial genetic method reveal cryptic phylogeographical structure and migration patterns among brown bears in north-western Eurasia
- (2012) Marju Keis et al. JOURNAL OF BIOGEOGRAPHY
- Phylogenetic Estimation of Timescales Using Ancient DNA: The Effects of Temporal Sampling Scheme and Uncertainty in Sample Ages
- (2012) M. Molak et al. MOLECULAR BIOLOGY AND EVOLUTION
- Bayesian Phylogenetics with BEAUti and the BEAST 1.7
- (2012) Alexei J. Drummond et al. MOLECULAR BIOLOGY AND EVOLUTION
- Mitogenomic analyses from ancient DNA
- (2012) Johanna L.A. Paijmans et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change
- (2012) W. Miller et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mitochondrial genomes from modern horses reveal the major haplogroups that underwent domestication
- (2012) A. Achilli et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Whole mitochondrial genome sequencing of domestic horses reveals incorporation of extensive wild horse diversity during domestication
- (2011) Sebastian Lippold et al. BMC EVOLUTIONARY BIOLOGY
- Inconsistencies in Estimating the Age of HIV-1 Subtypes Due to Heterotachy
- (2011) J. O. Wertheim et al. MOLECULAR BIOLOGY AND EVOLUTION
- Time-dependent rates of molecular evolution
- (2011) SIMON Y. W. HO et al. MOLECULAR ECOLOGY
- Bayesian Estimation of Substitution Rates from Ancient DNA Sequences with Low Information Content
- (2011) Simon Y. W. Ho et al. SYSTEMATIC BIOLOGY
- Faunal histories from Holocene ancient DNA
- (2011) Mark de Bruyn et al. TRENDS IN ECOLOGY & EVOLUTION
- phangorn: phylogenetic analysis in R
- (2010) Klaus Peter Schliep BIOINFORMATICS
- Bayesian analysis of elapsed times in continuous-time Markov chains
- (2010) Marco A. R. Ferreira et al. CANADIAN JOURNAL OF STATISTICS-REVUE CANADIENNE DE STATISTIQUE
- A Bayesian Phylogenetic Method to Estimate Unknown Sequence Ages
- (2010) B. Shapiro et al. MOLECULAR BIOLOGY AND EVOLUTION
- Improving Marginal Likelihood Estimation for Bayesian Phylogenetic Model Selection
- (2010) Wangang Xie et al. SYSTEMATIC BIOLOGY
- Why do species vary in their rate of molecular evolution?
- (2009) L. Bromham Biology Letters
- Ancient mitogenomics
- (2009) Simon Y.W. Ho et al. MITOCHONDRION
- Elevated substitution rate estimates from ancient DNA: model violation and bias of Bayesian methods
- (2009) MIGUEL NAVASCUÉS et al. MOLECULAR ECOLOGY
- High mitogenomic evolutionary rates and time dependency
- (2009) Sankar Subramanian et al. TRENDS IN GENETICS
- Hantavirus Evolution in Relation to Its Rodent and Insectivore Hosts: No Evidence for Codivergence
- (2008) C. Ramsden et al. MOLECULAR BIOLOGY AND EVOLUTION
- Accommodating the Effect of Ancient DNA Damage on Inferences of Demographic Histories
- (2008) A. Rambaut et al. MOLECULAR BIOLOGY AND EVOLUTION
- Smooth Skyride through a Rough Skyline: Bayesian Coalescent-Based Inference of Population Dynamics
- (2008) V. N. Minin et al. MOLECULAR BIOLOGY AND EVOLUTION
- Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes
- (2008) M. T. P. Gilbert et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mutation and Evolutionary Rates in Adélie Penguins from the Antarctic
- (2008) Craig D. Millar et al. PLoS Genetics
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