Phylogenetic Estimation of Timescales Using Ancient DNA: The Effects of Temporal Sampling Scheme and Uncertainty in Sample Ages

Rate variation and estimation of divergence times using strict and relaxed clocks

(2011) Richard P Brown et al.   BMC EVOLUTIONARY BIOLOGY

Time-dependent rates of molecular evolution

(2011) SIMON Y. W. HO et al.   MOLECULAR ECOLOGY

Species-specific responses of Late Quaternary megafauna to climate and humans

(2011) Eline D. Lorenzen et al.   NATURE

Bayesian Estimation of Substitution Rates from Ancient DNA Sequences with Low Information Content

(2011) Simon Y. W. Ho et al.   SYSTEMATIC BIOLOGY

Faunal histories from Holocene ancient DNA

(2011) Mark de Bruyn et al.   TRENDS IN ECOLOGY & EVOLUTION

Performance of criteria for selecting evolutionary models in phylogenetics: a comprehensive study based on simulated datasets

(2010) Arong Luo et al.   BMC EVOLUTIONARY BIOLOGY

A Bayesian Phylogenetic Method to Estimate Unknown Sequence Ages

(2010) B. Shapiro et al.   MOLECULAR BIOLOGY AND EVOLUTION

Using Time-Structured Data to Estimate Evolutionary Rates of Double-Stranded DNA Viruses

(2010) C. Firth et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Re-Emergence of H1N1 Influenza Virus in 1977: A Cautionary Tale for Estimating Divergence Times Using Biologically Unrealistic Sampling Dates

(2010) Joel O. Wertheim   PLoS One

Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics

(2010) P. F. Campos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complete mitochondrial genome of a Pleistocene jawbone unveils the origin of polar bear

(2010) C. Lindqvist et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A molecular approach to Neanderthal extinction

(2010) Danae Rebecca Dodge   QUATERNARY INTERNATIONAL

An examination of phylogenetic models of substitution rate variation among lineages

(2009) S. Y.W. Ho   Biology Letters

Sudden expansion of a single brown bear maternal lineage across northern continental Eurasia after the last ice age: a general demographic model for mammals?

(2009) MARJU KORSTEN et al.   MOLECULAR ECOLOGY

Using phylochronology to reveal cryptic population histories: review and synthesis of 29 ancient DNA studies

(2009) UMA RAMAKRISHNAN et al.   MOLECULAR ECOLOGY

Phylogeography of lions (Panthera leossp.) reveals three distinct taxa and a late Pleistocene reduction in genetic diversity

(2009) ROSS BARNETT et al.   MOLECULAR ECOLOGY

Accounting for Calibration Uncertainty in Phylogenetic Estimation of Evolutionary Divergence Times

(2009) Simon Y. W. Ho et al.   SYSTEMATIC BIOLOGY

Hantavirus Evolution in Relation to Its Rodent and Insectivore Hosts: No Evidence for Codivergence

(2008) C. Ramsden et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic uncertainty and molecular clock calibrations: A case study of legless lizards (Pygopodidae, Gekkota)

(2008) M.S.Y. Lee et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Effect of Inappropriate Calibration: Three Case Studies in Molecular Ecology

(2008) Simon Y. W. Ho et al.   PLoS One

Rapid molecular evolution in a living fossil

(2008) Jennifer M. Hay et al.   TRENDS IN GENETICS