标题
FMLRC: Hybrid long read error correction using an FM-index
作者
关键词
de novo assembly, Hybrid error correction, Long read, Pacbio, BWT, FM-Index
出版物
BMC BIOINFORMATICS
Volume 19, Issue 1, Pages -
出版商
Springer Nature
发表日期
2018-02-09
DOI
10.1186/s12859-018-2051-3
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Jabba: hybrid error correction for long sequencing reads
- (2016) Giles Miclotte et al. Algorithms for Molecular Biology
- Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences
- (2016) Heng Li BIOINFORMATICS
- CoLoRMap: Correcting Long Reads by Mapping short reads
- (2016) Ehsan Haghshenas et al. BIOINFORMATICS
- DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies
- (2016) Chengxi Ye et al. Scientific Reports
- hybridSPAdes: an algorithm for hybrid assembly of short and long reads
- (2015) Dmitry Antipov et al. BIOINFORMATICS
- Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome
- (2015) Sara Goodwin et al. GENOME RESEARCH
- Assembling large genomes with single-molecule sequencing and locality-sensitive hashing
- (2015) Konstantin Berlin et al. NATURE BIOTECHNOLOGY
- A complete bacterial genome assembled de novo using only nanopore sequencing data
- (2015) Nicholas J Loman et al. NATURE METHODS
- LoRDEC: accurate and efficient long read error correction
- (2014) Leena Salmela et al. BIOINFORMATICS
- Fast construction of FM-index for long sequence reads
- (2014) H. Li BIOINFORMATICS
- Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes
- (2014) Mari Miyamoto et al. BMC GENOMICS
- QUAST: quality assessment tool for genome assemblies
- (2013) Alexey Gurevich et al. BIOINFORMATICS
- Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
- (2013) Chen-Shan Chin et al. NATURE METHODS
- Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
- (2012) Mark J Chaisson et al. BMC BIOINFORMATICS
- A survey of error-correction methods for next-generation sequencing
- (2012) X. Yang et al. BRIEFINGS IN BIOINFORMATICS
- Hybrid error correction and de novo assembly of single-molecule sequencing reads
- (2012) Sergey Koren et al. NATURE BIOTECHNOLOGY
- Improving PacBio Long Read Accuracy by Short Read Alignment
- (2012) Kin Fai Au et al. PLoS One
- Repetitive DNA and next-generation sequencing: computational challenges and solutions
- (2011) Todd J. Treangen et al. NATURE REVIEWS GENETICS
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started