AceTree: a major update and case study in the long term maintenance of open-source scientific software

WormGUIDES: an interactive single cell developmental atlas and tool for collaborative multidimensional data exploration

(2015) Anthony Santella et al.   BMC BIOINFORMATICS

Whole-central nervous system functional imaging in larval Drosophila

(2015) William C. Lemon et al.   Nature Communications

Untwisting the Caenorhabditis elegans embryo

(2015) Ryan Patrick Christensen et al.   eLife

Computational Image Analysis Reveals Intrinsic Multigenerational Differences between Anterior and Posterior Cerebral Cortex Neural Progenitor Cells

(2015) Mark R. Winter et al.   Stem Cell Reports

Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data

(2014) Fernando Amat et al.   NATURE METHODS

Dual-view plane illumination microscopy for rapid and spatially isotropic imaging

(2014) Abhishek Kumar et al.   Nature Protocols

Endrov: an integrated platform for image analysis

(2013) Johan Henriksson et al.   NATURE METHODS

Whole-brain functional imaging at cellular resolution using light-sheet microscopy

(2013) Misha B Ahrens et al.   NATURE METHODS

Fast, high-contrast imaging of animal development with scanned light sheet–based structured-illumination microscopy

(2010) Philipp J Keller et al.   NATURE METHODS