Revisiting the Darwinian shortfall in biodiversity conservation

Tetrapods on the EDGE: Overcoming data limitations to identify phylogenetic conservation priorities

(2018) Rikki Gumbs et al.   PLoS One

Unbuttoning the Ancestral Flower of Angiosperms

(2018) Orlando C. De-Paula et al.   TRENDS IN PLANT SCIENCE

Biodiversity moves beyond counting species

(2017) Rachel Cernansky   NATURE

Conserving Phylogenetic Diversity Can Be a Poor Strategy for Conserving Functional Diversity

(2017) Florent Mazel et al.   SYSTEMATIC BIOLOGY

Why Do Phylogenomic Data Sets Yield Conflicting Trees? Data Type Influences the Avian Tree of Life more than Taxon Sampling

(2017) Sushma Reddy et al.   SYSTEMATIC BIOLOGY

The jazz of cladistics*

(2017) Leandro C.S. Assis   SYSTEMATICS AND BIODIVERSITY

Phylogenetic Paleoecology: Tree-Thinking and Ecology in Deep Time

(2017) James C. Lamsdell et al.   TRENDS IN ECOLOGY & EVOLUTION

Patterns of character evolution in phylogenies

(2017) Leandro C. S. Assis   Journal of Systematics and Evolution

The ancestral flower of angiosperms and its early diversification

(2017) Hervé Sauquet et al.   Nature Communications

A guide to phylogenetic metrics for conservation, community ecology and macroecology

(2016) Caroline M. Tucker et al.   BIOLOGICAL REVIEWS

Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data

(2016) Joseph E. O'Reilly et al.   Biology Letters

Assessing similarity: on homology, characters and the need for a semantic approach to non-evolutionary comparative homology

(2016) Lars Vogt   CLADISTICS

Seven Shortfalls that Beset Large-Scale Knowledge of Biodiversity

(2015) Joaquín Hortal et al.   Annual Review of Ecology Evolution and Systematics

Molecular homology and multiple-sequence alignment: an analysis of concepts and practice

(2015) David A. Morrison et al.   AUSTRALIAN SYSTEMATIC BOTANY

Evolution of petaloidy in the zingiberales: An assessment of the relationship between ultrastructure and gene expression patterns

(2015) Ana Maria Rocha de Almeida et al.   DEVELOPMENTAL DYNAMICS

Irrational exuberance for resolved species trees

(2015) Matthew W. Hahn et al.   EVOLUTION

The semaphorontic view of homology

(2015) Joyce C. Havstad et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Tree of Life Reveals Clock-Like Speciation and Diversification

(2015) S. Blair Hedges et al.   MOLECULAR BIOLOGY AND EVOLUTION

A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing

(2015) Richard O. Prum et al.   NATURE

Incompatible Ages for Clearwing Butterflies Based on Alternative Secondary Calibrations

(2015) Ivonne J. Garzón-Orduña et al.   SYSTEMATIC BIOLOGY

Homology assessment in parsimony and model-based analyses: two sides of the same coin

(2014) Leandro C. S. Assis   CLADISTICS

Global Distribution and Conservation of Evolutionary Distinctness in Birds

(2014) Walter Jetz et al.   CURRENT BIOLOGY

Phylogenetic diversity, habitat loss and conservation in South American pitvipers (Crotalinae:BothropsandBothrocophias)

(2014) Jéssica Fenker et al.   DIVERSITY AND DISTRIBUTIONS

Phylogenetic trees do not reliably predict feature diversity

(2014) Steven Kelly et al.   DIVERSITY AND DISTRIBUTIONS

Wagner, G. P. 2014. Homology, Genes, and Evolutionary Novelties. Princeton University Press, Princeton, NJ. 498 pp. ISBN 978-0-691-15646-0

(2014) Olivier Rieppel   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Bayesian Analysis Using a Simple Likelihood Model Outperforms Parsimony for Estimation of Phylogeny from Discrete Morphological Data

(2014) April M. Wright et al.   PLoS One

Phylogenomics resolves the timing and pattern of insect evolution

(2014) B. Misof et al.   SCIENCE

Whole-genome analyses resolve early branches in the tree of life of modern birds

(2014) E. D. Jarvis et al.   SCIENCE

Biogeographic Analysis Reveals Ancient Continental Vicariance and Recent Oceanic Dispersal in Amphibians

(2014) R. Alexander Pyron   SYSTEMATIC BIOLOGY

Miniatures, morphology and molecules:Paedocyprisand its phylogenetic position (Teleostei, Cypriniformes)

(2014) Ralf Britz et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Testing evolutionary hypotheses: from Willi Hennig to Angiosperm Phylogeny Group

(2013) Leandro C. S. Assis   CLADISTICS

Anatomy of a cladistic analysis

(2013) Nico M. Franz   CLADISTICS

Rigorous approaches to species delimitation have significant implications for African crocodilian systematics and conservation

(2013) M. H. Shirley et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Darwinian shortfalls in biodiversity conservation

(2013) José Alexandre F. Diniz-Filho et al.   TRENDS IN ECOLOGY & EVOLUTION

Using multiple analytical methods to improve phylogenetic hypotheses in Minaria (Apocynaceae)

(2012) Patrícia Luz Ribeiro et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Evidence for determinism in species diversification and contingency in phenotypic evolution during adaptive radiation

(2012) F. T. Burbrink et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenetic diversity and nature conservation: where are we?

(2012) Marten Winter et al.   TRENDS IN ECOLOGY & EVOLUTION

Using phylogenies in conservation: new perspectives

(2011) J. Rolland et al.   Biology Letters

What is parallelism?

(2011) Robert W. Scotland   EVOLUTION & DEVELOPMENT

A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians

(2011) R. Alexander Pyron et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Evaluating Fossil Calibrations for Dating Phylogenies in Light of Rates of Molecular Evolution: A Comparison of Three Approaches

(2011) Vimoksalehi Lukoschek et al.   SYSTEMATIC BIOLOGY

A simple polytomy resolver for dated phylogenies

(2011) Tyler S. Kuhn et al.   Methods in Ecology and Evolution

Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough

(2011) Hervé Philippe et al.   PLOS BIOLOGY

Deep homology: A view from systematics

(2010) Robert W. Scotland   BIOESSAYS

The Jungle of Methods for Evaluating Phenotypic and Phylogenetic Structure of Communities

(2010) Juli G. Pausas et al.   BIOSCIENCE

Do model-based phylogenetic analyses perform better than parsimony? A test with empirical data

(2010) Eirik Rindal et al.   CLADISTICS

Are monophyly and synapomorphy the same or different? Revisiting the role of morphology in phylogenetics

(2010) Leandro C.S. Assis et al.   CLADISTICS

The world’s smallest vertebrate species of the genus Paedocypris: A new family of freshwater fishes and the sister group to the world’s most diverse clade of freshwater fishes (Teleostei: Cypriniformes)

(2010) Richard L. Mayden et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Coherence, correspondence, and the renaissance of morphology in phylogenetic systematics

(2009) Leandro C. S. Assis   CLADISTICS

Phylogenetic support values are not necessarily informative: the case of the Serialia hypothesis (a mollusk phylogeny)

(2009) J Wolfgang Wägele et al.   Frontiers in Zoology

Are molecular data supplanting morphological data in modern phylogenetic studies?

(2009) SETH M. BYBEE et al.   SYSTEMATIC ENTOMOLOGY

Morphological and molecular evidence for phylogeny and classification of South American pitvipers, generaBothrops,Bothriopsis, andBothrocophias(Serpentes: Viperidae)

(2009) ALLYSON M. FENWICK et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Osteology ofPaedocypris, a miniature and highly developmentally truncated fish (Teleostei: Ostariophysi: Cyprinidae)

(2008) R. Britz et al.   JOURNAL OF MORPHOLOGY