A microbial community snapshot of windrows from a commercial composting facility

Succession of the functional microbial communities and the metabolic functions in maize straw composting process

(2018) Huawei Wei et al.   BIORESOURCE TECHNOLOGY

Normalization and microbial differential abundance strategies depend upon data characteristics

(2017) Sophie Weiss et al.   Microbiome

Reducing antibiotic resistance genes, integrons, and pathogens in dairy manure by continuous thermophilic composting

(2016) Xun Qian et al.   BIORESOURCE TECHNOLOGY

Metagenomic analysis of microbial consortia enriched from compost: new insights into the role of Actinobacteria in lignocellulose decomposition

(2016) Cheng Wang et al.   Biotechnology for Biofuels

Metagenomic analysis of rapid gravity sand filter microbial communities suggests novel physiology of Nitrospira spp.

(2016) Alejandro Palomo et al.   ISME Journal

Polycyclic aromatic hydrocarbons degradation and microbial community shifts during co-composting of creosote-treated wood

(2016) Stefano Covino et al.   JOURNAL OF HAZARDOUS MATERIALS

Database Resources of the National Center for Biotechnology Information

(2016)   NUCLEIC ACIDS RESEARCH

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Combining woody biomass for combustion with green waste composting: Effect of removal of woody biomass on compost quality

(2016) Bart Vandecasteele et al.   WASTE MANAGEMENT

Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics

(2016) Luciana Principal Antunes et al.   Scientific Reports

A new view of the tree of life

(2016) Laura A. Hug et al.   Nature Microbiology

Screening, identification, and characterization of a GH43 family β-xylosidase/α-arabinofuranosidase from a compost microbial metagenome

(2015) Tomohiko Matsuzawa et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Antibiotic Resistome and Its Association with Bacterial Communities during Sewage Sludge Composting

(2015) Jian-Qiang Su et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Camelimonas fluminis sp. nov., a cyhalothrin-degrading bacterium isolated from river water

(2015) Long Zhang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Limnochorda pilosa gen. nov., sp. nov., a moderately thermophilic, facultatively anaerobic, pleomorphic bacterium and proposal of Limnochordaceae fam. nov., Limnochordales ord. nov. and Limnochordia classis nov. in the phylum Firmicutes

(2015) Miho Watanabe et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Refining the phylum Chlorobi by resolving the phylogeny and metabolic potential of the representative of a deeply branching, uncultivated lineage

(2015) Jennifer Hiras et al.   ISME Journal

Unusual biology across a group comprising more than 15% of domain Bacteria

(2015) Christopher T. Brown et al.   NATURE

Ten years of life in compost: temporal and spatial variation of North GermanCaenorhabditis eleganspopulations

(2015) Carola Petersen et al.   Ecology and Evolution

VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data

(2015) Cedric C Laczny et al.   Microbiome

Biodegradability of Epoxidized Soybean Oil Based Thermosets in Compost Soil Environment

(2013) W. S. Chow et al.   JOURNAL OF POLYMERS AND THE ENVIRONMENT

Isolation and Characterization of a Thermophilic, Obligately Anaerobic and Heterotrophic Marine Chloroflexi Bacterium from a Chloroflexi-dominated Microbial Community Associated with a Japanese Shallow Hydrothermal System, and Proposal for Thermomarinilinea lacunofontalis gen. nov., sp. nov.

(2013) Takuro Nunoura et al.   MICROBES AND ENVIRONMENTS

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

(2013) Mads Albertsen et al.   NATURE BIOTECHNOLOGY

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Dirichlet Multinomial Mixtures: Generative Models for Microbial Metagenomics

(2012) Ian Holmes et al.   PLoS One

Integrating mixed microbial population dynamics into modeling energy transport during the initial stages of the aerobic composting of a switchgrass mixture

(2011) Linelle T. Fontenelle et al.   BIORESOURCE TECHNOLOGY

Growth of Ammonia-Oxidizing Archaea and Bacteria in Cattle Manure Compost under Various Temperatures and Ammonia Concentrations

(2011) Ryu Oishi et al.   MICROBIAL ECOLOGY

Isolation and characterization of Thermanaerothrix daxensis gen. nov., sp. nov., a thermophilic anaerobic bacterium pertaining to the phylum “Chloroflexi”, isolated from a deep hot aquifer in the Aquitaine Basin

(2011) Patrick Grégoire et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Calditerricola satsumensis gen. nov., sp. nov. and Calditerricola yamamurae sp. nov., extreme thermophiles isolated from a high-temperature compost

(2010) T. Moriya et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Diversity and Abundance of Ammonia-Oxidizing Bacteria and Ammonia-Oxidizing Archaea During Cattle Manure Composting

(2010) Nozomi Yamamoto et al.   MICROBIAL ECOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY