Repeat-induced point (RIP) mutation in the industrial workhorse fungus Trichoderma reesei

DNA sequence homology induces cytosine-to-thymine mutation by a heterochromatin-related pathway in Neurospora

(2017) Eugene Gladyshev et al.   NATURE GENETICS

Recombination-independent recognition of DNA homology for repeat-induced point mutation

(2016) Eugene Gladyshev et al.   CURRENT GENETICS

Cellulases and beyond: the first 70 years of the enzyme producer Trichoderma reesei

(2016) Robert H. Bischof et al.   Microbial Cell Factories

The Genomes of Three Uneven Siblings: Footprints of the Lifestyles of Three Trichoderma Species

(2016) Monika Schmoll et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Sordaria, a model system to uncover links between meiotic pairing and recombination

(2016) Denise Zickler et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Recombination-Independent Recognition of DNA Homology for Repeat-Induced Point Mutation (RIP) Is Modulated by the Underlying Nucleotide Sequence

(2016) Eugene Gladyshev et al.   PLoS Genetics

Trichoderma reesei meiosis generates segmentally aneuploid progeny with higher xylanase-producing capability

(2015) Yu-Chien Chuang et al.   Biotechnology for Biofuels

Restoration of female fertility in Trichoderma reesei QM6a provides the basis for inbreeding in this industrial cellulase producing fungus

(2015) Rita Linke et al.   Biotechnology for Biofuels

Genome Sequencing of Multiple Isolates Highlights Subtelomeric Genomic Diversity withinFusarium fujikuroi

(2015) Matteo Chiara et al.   Genome Biology and Evolution

The landscape of transposable elements in the finished genome of the fungal wheat pathogen Mycosphaerella graminicola

(2015) Braham Dhillon et al.   BMC GENOMICS

The Cullin-4 Complex DCDC Does Not Require E3 Ubiquitin Ligase Elements To Control Heterochromatin in Neurospora crassa

(2014) Keyur K. Adhvaryu et al.   EUKARYOTIC CELL

Direct recognition of homology between double helices of DNA in Neurospora crassa

(2014) Eugene Gladyshev et al.   Nature Communications

HAM-5 Functions As a MAP Kinase Scaffold during Cell Fusion in Neurospora crassa

(2014) Wilfried Jonkers et al.   PLoS Genetics

Genome Sequencing and Comparative Genomics of the Broad Host-Range Pathogen Rhizoctonia solani AG8

(2014) James K. Hane et al.   PLoS Genetics

Initiation of Meiotic Recombination: How and Where? Conservation and Specificities Among Eukaryotes

(2013) Bernard de Massy   Annual Review of Genetics

Neurospora crassa, a Model System for Epigenetics Research

(2013) R. Aramayo et al.   Cold Spring Harbor Perspectives in Biology

A versatile toolkit for high throughput functional genomics with Trichoderma reesei

(2012) Andre Schuster et al.   Biotechnology for Biofuels

Patterns of Repeat-Induced Point Mutation in Transposable Elements of Basidiomycete Fungi

(2012) Felix Horns et al.   Genome Biology and Evolution

Genomic tillage and the harvest of fungal phytopathogens

(2012) Richard Oliver   NEW PHYTOLOGIST

Bisulfite Sequencing Reveals That Aspergillus flavus Holds a Hollow in DNA Methylation

(2012) Si-Yang Liu et al.   PLoS One

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

(2011) Christian P Kubicek et al.   GENOME BIOLOGY

In silico reversal of repeat-induced point mutation (RIP) identifies the origins of repeat families and uncovers obscured duplicated genes

(2010) James K Hane et al.   BMC GENOMICS

Genomic evidence of repeat-induced point mutation (RIP) in filamentous ascomycetes

(2010) A. John Clutterbuck   FUNGAL GENETICS AND BIOLOGY

Identification of DIM-7, a protein required to target the DIM-5 H3 methyltransferase to chromatin

(2010) Z. A. Lewis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

De novo Assembly of a 40 Mb Eukaryotic Genome from Short Sequence Reads: Sordaria macrospora, a Model Organism for Fungal Morphogenesis

(2010) Minou Nowrousian et al.   PLoS Genetics

Ubiquitin Ligase Components Cullin4 and DDB1 Are Essential for DNA Methylation inNeurospora crassa

(2009) Yuanbiao Zhao et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Sexual development in the industrial workhorse Trichoderma reesei

(2009) V. Seidl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences

(2008) James K Hane et al.   BMC BIOINFORMATICS

Repeat induced point mutation in two asexual fungi, Aspergillus niger and Penicillium chrysogenum

(2008) Ilka Braumann et al.   CURRENT GENETICS

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

(2008) Diego Martinez et al.   NATURE BIOTECHNOLOGY

A Cytosine Methyltransferase Homologue Is Essential for Sexual Development in Aspergillus nidulans

(2008) Dong W. Lee et al.   PLoS One

The fungus Neurospora crassa displays telomeric silencing mediated by multiple sirtuins and by methylation of histone H3 lysine 9

(2008) Kristina M Smith et al.   Epigenetics & Chromatin

The genome sequence of the model ascomycete fungus Podospora anserina

(2008) Eric Espagne et al.   GENOME BIOLOGY