Characteristics of ARG-carrying plasmidome in the cultivable microbial community from wastewater treatment system under high oxytetracycline concentration

Evaluation of PacBio sequencing for full-length bacterial 16S rRNA gene classification

(2016) Josef Wagner et al.   BMC MICROBIOLOGY

Changes of resistome, mobilome and potential hosts of antibiotic resistance genes during the transformation of anaerobic digestion from mesophilic to thermophilic

(2016) Zhe Tian et al.   WATER RESEARCH

Metagenomic Assembly Reveals Hosts of Antibiotic Resistance Genes and the Shared Resistome in Pig, Chicken, and Human Feces

(2015) Liping Ma et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

High Concentrations of the Antibiotic Spiramycin in Wastewater Lead to High Abundance of Ammonia-Oxidizing Archaea in Nitrifying Populations

(2015) Yu Zhang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Genetic characterization of a novelblaDIM-2-carrying megaplasmid p12969-DIM from clinicalPseudomonas putida

(2015) Fengjun Sun et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Effects of long-term manure applications on the occurrence of antibiotics and antibiotic resistance genes (ARGs) in paddy soils: Evidence from four field experiments in south of China

(2015) Xianjin Tang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Exploring antibiotic resistance genes and metal resistance genes in plasmid metagenomes from wastewater treatment plants

(2015) An-Dong Li et al.   Frontiers in Microbiology

Selective pressure of antibiotics on ARGs and bacterial communities in manure-polluted freshwater-sediment microcosms

(2015) Wenguang Xiong et al.   Frontiers in Microbiology

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

EsrC, an envelope stress-regulated repressor of themexCD-oprJmultidrug efflux operon inPseudomonas aeruginosa

(2014) Andrew Purssell et al.   ENVIRONMENTAL MICROBIOLOGY

Exploring Variation of Antibiotic Resistance Genes in Activated Sludge over a Four-Year Period through a Metagenomic Approach

(2013) Ying Yang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Community-wide plasmid gene mobilization and selection

(2013) Vladimir Sentchilo et al.   ISME Journal

Marine Sediment Bacteria Harbor Antibiotic Resistance Genes Highly Similar to Those Found in Human Pathogens

(2013) Jing Yang et al.   MICROBIAL ECOLOGY

Abundance and Distribution of Tetracycline Resistance Genes and Mobile Elements in an Oxytetracycline Production Wastewater Treatment System

(2012) Miaomiao Liu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Composition, Diversity, and Origin of the Bacterial Community in Grass Carp Intestine

(2012) Shangong Wu et al.   PLoS One

Insights into the bovine rumen plasmidome

(2012) A. B. Kav et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative studies of de novo assembly tools for next-generation sequencing technologies

(2011) Yong Lin et al.   BIOINFORMATICS

BamTools: a C++ API and toolkit for analyzing and managing BAM files

(2011) D. W. Barnett et al.   BIOINFORMATICS

Complete genome and comparative analysis of Streptococcus gallolyticus subsp. gallolyticus, an emerging pathogen of infective endocarditis

(2011) Dennis Hinse et al.   BMC GENOMICS

Analysis of two marine metagenomes reveals the diversity of plasmids in oceanic environments

(2011) Yingfei Ma et al.   ENVIRONMENTAL MICROBIOLOGY

Multiresistance, beta-lactamase-encoding genes and bacterial diversity in hospital wastewater in Rio de Janeiro, Brazil

(2011) T.P.G. Chagas et al.   JOURNAL OF APPLIED MICROBIOLOGY

Pyrosequencing of Antibiotic-Contaminated River Sediments Reveals High Levels of Resistance and Gene Transfer Elements

(2011) Erik Kristiansson et al.   PLoS One

Antibiotic Resistance Characteristics of Environmental Bacteria from an Oxytetracycline Production Wastewater Treatment Plant and the Receiving River

(2010) D. Li et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Antibiotic-resistance profile in environmental bacteria isolated from penicillin production wastewater treatment plant and the receiving river

(2009) Dong Li et al.   ENVIRONMENTAL MICROBIOLOGY

Detection of 140 clinically relevant antibiotic-resistance genes in the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to selected antibiotics

(2009) R. Szczepanowski et al.   MICROBIOLOGY-SGM

Plasmid encoded antibiotic resistance: acquisition and transfer of antibiotic resistance genes in bacteria

(2008) P M Bennett   BRITISH JOURNAL OF PHARMACOLOGY

Insight into the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to antimicrobial drugs analysed by the 454-pyrosequencing technology

(2008) Rafael Szczepanowski et al.   JOURNAL OF BIOTECHNOLOGY