Phylogenetic framework for the phylum Tenericutes based on genome sequence data: proposal for the creation of a new order Mycoplasmoidales ord. nov., containing two new families Mycoplasmoidaceae fam. nov. and Metamycoplasmataceae fam. nov. harbouring Eperythrozoon, Ureaplasma and five novel genera
出版年份 2018 全文链接
标题
Phylogenetic framework for the phylum Tenericutes based on genome sequence data: proposal for the creation of a new order Mycoplasmoidales ord. nov., containing two new families Mycoplasmoidaceae fam. nov. and Metamycoplasmataceae fam. nov. harbouring Eperythrozoon, Ureaplasma and five novel genera
作者
关键词
Tenericutes, Order <em class=EmphasisTypeItalic >Mycoplasmatales</em>, <em class=EmphasisTypeItalic >Mycoplasma</em>, <em class=EmphasisTypeItalic >Eperythrozoon</em>, <em class=EmphasisTypeItalic >Haemobartonella</em>, Phylogeny, Taxonomy, Conserved signature indels, Phylogenomic studies, Comparative genomics, Molecular signatures
出版物
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
Volume -, Issue -, Pages -
出版商
Springer Nature
发表日期
2018-03-20
DOI
10.1007/s10482-018-1047-3
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- (2018) et al. Genes
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- (2017) Seema Alnajar et al. INFECTION GENETICS AND EVOLUTION
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- (2016) Paul A. Lawson et al. ANAEROBE
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- (2014) Sébastien Leclercq et al. Genome Biology and Evolution
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- (2014) B. J. Tindall INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
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- (2014) M. May et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
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