Molecular Characterization of IMP-1-Producing Enterobacter cloacae Complex Isolates in Tokyo

Carbapenem-Resistant Enterobacteriaceae: A Strategic Roadmap for Infection Control

(2017) N. Deborah Friedman et al.   INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY

Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies

(2017)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Multi-institute analysis of carbapenem resistance reveals remarkable diversity, unexplained mechanisms, and limited clonal outbreaks

(2017) Gustavo C. Cerqueira et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complete Sequencing of Plasmids ContainingblaOXA-163andblaOXA-48in Escherichia coli Sequence Type 131

(2016) Nicole Stoesser et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Comparing the Outcomes of Patients With Carbapenemase-Producing and Non-Carbapenemase-Producing Carbapenem-ResistantEnterobacteriaceaeBacteremia

(2016) Pranita D. Tamma et al.   CLINICAL INFECTIOUS DISEASES

Tolerance to multiple metal stressors in emerging non-typhoidal MDRSalmonellaserotypes: a relevant role for copper in anaerobic conditions

(2016) Joana Mourão et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Plasmid Dynamics in KPC-Positive Klebsiella pneumoniae during Long-Term Patient Colonization

(2016) Sean Conlan et al.   mBio

Comprehensive Genome Analysis of Carbapenemase-Producing Enterobacter spp.: New Insights into Phylogeny, Population Structure, and Resistance Mechanisms

(2016) Kalyan D. Chavda et al.   mBio

Isolation and plasmid characterization of carbapenemase (IMP-4) producing Salmonella enterica Typhimurium from cats

(2016) Sam Abraham et al.   Scientific Reports

Klebsiella pneumoniae Carbapenemase (KPC)-Producing K. pneumoniae at a Single Institution: Insights into Endemicity from Whole-Genome Sequencing

(2015) Amy J. Mathers et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Genomic Characteristics of NDM-Producing Enterobacteriaceae Isolates in Australia and TheirblaNDMGenetic Contexts

(2015) Alexander M. Wailan et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The Role of Epidemic Resistance Plasmids and International High-Risk Clones in the Spread of Multidrug-Resistant Enterobacteriaceae

(2015) Amy J. Mathers et al.   CLINICAL MICROBIOLOGY REVIEWS

ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes

(2015) Xavier Didelot et al.   PLoS Computational Biology

Molecular and Epidemiological Characterization of IMP-Type Metallo-β-Lactamase-Producing Enterobacter cloacae in a Large Tertiary Care Hospital in Japan

(2014) Kayoko Hayakawa et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Molecular Mechanisms Underlying Bacterial Persisters

(2014) Etienne Maisonneuve et al.   CELL

Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes

(2014) M. Kim et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

MLST reveals potentially high-risk international clones of Enterobacter cloacae*

(2014) R. Izdebski et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Interspecies Transfer of blaIMP-4 in a Patient with Prolonged Colonization by IMP-4-Producing Enterobacteriaceae

(2014) H. E. Sidjabat et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae

(2014) S. Conlan et al.   Science Translational Medicine

Selection of a Multidrug Resistance Plasmid by Sublethal Levels of Antibiotics and Heavy Metals

(2014) E. Gullberg et al.   mBio

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Polyclonal Outbreak of KPC-3-Producing Enterobacter cloacae at a Single Hospital in Montreal, Quebec, Canada

(2013) L.-P. Haraoui et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Multilocus Sequence Typing (MLST) for Characterization of Enterobacter cloacae

(2013) Tohru Miyoshi-Akiyama et al.   PLoS One

High Frequency of IMP-6 among Clinical Isolates of Metallo-β-Lactamase-Producing Escherichia coli in Japan

(2012) Hisakazu Yano et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

(2012) D. C. Koboldt et al.   GENOME RESEARCH

Genetic Features of the Widespread Plasmid Coding for the Carbapenemase OXA-48

(2011) Laurent Poirel et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Easyfig: a genome comparison visualizer

(2011) M. J. Sullivan et al.   BIOINFORMATICS

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

Emergence in Japan of an imipenem-susceptible, meropenem-resistant Klebsiella pneumoniae carrying blaIMP-6

(2011) Norifumi Shigemoto et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mobilization of qnrB2 and ISCR1 in Plasmids

(2008) Y.-T. Chen et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY