Quantitative species-level ecology of reef fish larvae via metabarcoding

New record of the spiny pufferfish, Tylerius spinosissimus (Regan, 1908), from Israel, Gulf of Aqaba, Red Sea (Actinopterygii: Tetraodontiformes: Tetraodontidae)

(2016) R. Fricke   ACTA ICHTHYOLOGICA ET PISCATORIA

Beyond Baselines: Rethinking Priorities for Ocean Conservation

(2016) Lisa M. Campbell et al.   ECOLOGY AND SOCIETY

A review of contemporary patterns of endemism for shallow water reef fauna in the Red Sea

(2015) Joseph D. DiBattista et al.   JOURNAL OF BIOGEOGRAPHY

Quantification of mesocosm fish and amphibian species diversity via environmental DNA metabarcoding

(2015) Nathan T. Evans et al.   Molecular Ecology Resources

DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity

(2015) Matthieu Leray et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match

(2014) B. E. Deagle et al.   Biology Letters

Taxonomy and systematics of larval Indo-Pacific fishes: a review of progress since 1981

(2014) Jeffrey M. Leis   ICHTHYOLOGICAL RESEARCH

Identifying the ichthyoplankton of a coral reef using DNA barcodes

(2014) Nicolas Hubert et al.   Molecular Ecology Resources

A coral reef refuge in the Red Sea

(2013) Maoz Fine et al.   GLOBAL CHANGE BIOLOGY

Role of propagule pressure in colonization success: disentangling the relative importance of demographic, genetic and habitat effects

(2013) R. A. Hufbauer et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

First record of the Spiny blaasop Tylerius spinosissimus (Regan, 1908) (Tetraodontidae) from the Turkish coasts

(2013) C. TURAN et al.   MEDITERRANEAN MARINE SCIENCE

MitoFish and MitoAnnotator: A Mitochondrial Genome Database of Fish with an Accurate and Automatic Annotation Pipeline

(2013) W. Iwasaki et al.   MOLECULAR BIOLOGY AND EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

High-throughput chromatin immunoprecipitation for genome-wide mapping of in vivo protein-DNA interactions and epigenomic states

(2013) Ronnie Blecher-Gonen et al.   Nature Protocols

The microbiome explored: recent insights and future challenges

(2013) Martin Blaser et al.   NATURE REVIEWS MICROBIOLOGY

Shrimp-gobies in the southern Gulf of Aqaba (Red Sea)

(2013) Mario Freinschlag et al.   ZOOLOGY IN THE MIDDLE EAST

Four new species of coral gobies (Teleostei: Gobiidae: Gobiodon), with comments on their relationships within the genus

(2013) JUERGEN HERLER et al.   ZOOTAXA

Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification

(2013) Xin Zhou et al.   GigaScience

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Next-Generation Sequencing for Rodent Barcoding: Species Identification from Fresh, Degraded and Environmental Samples

(2012) Maxime Galan et al.   PLoS One

Vertical distribution and ontogenetic "migration" in coral reef fish larvae

(2011) Jean-Olivier Irisson et al.   LIMNOLOGY AND OCEANOGRAPHY

Variation in repeat length and heteroplasmy of the mitochondrial DNA control region along a core-edge gradient in the eastern spadefoot toad (Pelobates syriacus)

(2011) INBAR MUNWES et al.   MOLECULAR ECOLOGY

Critical thresholds and tangible targets for ecosystem-based management of coral reef fisheries

(2011) T. R. McClanahan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Human activity selectively impacts the ecosystem roles of parrotfishes on coral reefs

(2011) D. R. Bellwood et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

DNA Barcoding of Marine Metazoa

(2010) Ann Bucklin et al.   Annual Review of Marine Science

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

(2010) Frederick A Matsen et al.   BMC BIOINFORMATICS

Orientation Cage and Release Experiments with Migratory Wheatears (Oenanthe oenanthe) in Scandinavia and Greenland: The Importance of Visual Cues

(2010) Ulf Ottosson et al.   ETHOLOGY

Causes of decoupling between larval supply and settlement and consequences for understanding recruitment and population connectivity

(2010) Jesús Pineda et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Identifying coral reef fish larvae through DNA barcoding: A test case with the families Acanthuridae and Holocentridae

(2010) Nicolas Hubert et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Variability in the trophic role of coral reef fish larvae in the oceanic plankton

(2009) JK Llopiz et al.   MARINE ECOLOGY PROGRESS SERIES

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Larval Dispersal and Marine Population Connectivity

(2008) Robert K. Cowen et al.   Annual Review of Marine Science

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Descending to the twilight-zone: changes in coral reef fish assemblages along a depth gradient down to 65 m

(2008) E Brokovich et al.   MARINE ECOLOGY PROGRESS SERIES