Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing
出版年份 2017 全文链接
标题
Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing
作者
关键词
Resistome, Antimicrobial resistance, Molecular enrichment, Microbial ecology, Rare microbiome
出版物
Microbiome
Volume 5, Issue 1, Pages -
出版商
Springer Nature
发表日期
2017-10-17
DOI
10.1186/s40168-017-0361-8
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist’s Perspective - Not Only Size Matters!
- (2017) John Vollmers et al. PLoS One
- An expansion of rare lineage intestinal microbes characterizes rheumatoid arthritis
- (2016) Jun Chen et al. Genome Medicine
- Resistome diversity in cattle and the environment decreases during beef production
- (2016) Noelle R Noyes et al. eLife
- Characterization of the resistome in manure, soil and wastewater from dairy and beef production systems
- (2016) Noelle R. Noyes et al. Scientific Reports
- Antibiotic Selection Pressure Determination through Sequence-Based Metagenomics
- (2015) Matthias Willmann et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Whole-Genome Sequencing in Outbreak Analysis
- (2015) Carol A. Gilchrist et al. CLINICAL MICROBIOLOGY REVIEWS
- Enhanced virome sequencing using targeted sequence capture
- (2015) Todd N. Wylie et al. GENOME RESEARCH
- Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes
- (2015) Bing Li et al. ISME Journal
- Ecology and exploration of the rare biosphere
- (2015) Michael D. J. Lynch et al. NATURE REVIEWS MICROBIOLOGY
- Virome Capture Sequencing Enables Sensitive Viral Diagnosis and Comprehensive Virome Analysis
- (2015) Thomas Briese et al. mBio
- Limited dissemination of the wastewater treatment plant core resistome
- (2015) Christian Munck et al. Nature Communications
- Fire in the Belly? Sulfur-Reducing Gut Microbes Fuel Arsenic Thiolation
- (2014) Carol Potera ENVIRONMENTAL HEALTH PERSPECTIVES
- Coselection for resistance to multiple late-generation human therapeutic antibiotics encoded on tetracycline resistance plasmids captured from uncultivated stream and soil bacteria
- (2014) J.B. Herrick et al. JOURNAL OF APPLIED MICROBIOLOGY
- Detecting ultralow-frequency mutations by Duplex Sequencing
- (2014) Scott R Kennedy et al. Nature Protocols
- Targeted sequencing for gene discovery and quantification using RNA CaptureSeq
- (2014) Tim R Mercer et al. Nature Protocols
- What is a resistance gene? Ranking risk in resistomes
- (2014) José L. Martínez et al. NATURE REVIEWS MICROBIOLOGY
- Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible
- (2014) Paul J. McMurdie et al. PLoS Computational Biology
- Enriching pathogen transcripts from infected samples: A capture-based approach to enhanced host–pathogen RNA sequencing
- (2013) Zachary W. Bent et al. ANALYTICAL BIOCHEMISTRY
- The Comprehensive Antibiotic Resistance Database
- (2013) Andrew G. McArthur et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- ARG-ANNOT, a New Bioinformatic Tool To Discover Antibiotic Resistance Genes in Bacterial Genomes
- (2013) Sushim Kumar Gupta et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Antimicrobial Resistance and Virulence: a Successful or Deleterious Association in the Bacterial World?
- (2013) A. Beceiro et al. CLINICAL MICROBIOLOGY REVIEWS
- Differential abundance analysis for microbial marker-gene surveys
- (2013) Joseph N Paulson et al. NATURE METHODS
- BacMet: antibacterial biocide and metal resistance genes database
- (2013) Chandan Pal et al. NUCLEIC ACIDS RESEARCH
- A Method for Selectively Enriching Microbial DNA from Contaminating Vertebrate Host DNA
- (2013) George R. Feehery et al. PLoS One
- Distinguishable Epidemics of Multidrug-Resistant Salmonella Typhimurium DT104 in Different Hosts
- (2013) A. E. Mather et al. SCIENCE
- Metagenomics for pathogen detection in public health
- (2013) Ruth R Miller et al. Genome Medicine
- Identification of acquired antimicrobial resistance genes
- (2012) E. Zankari et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Analyses of the Microbial Diversity across the Human Microbiome
- (2012) Kelvin Li et al. PLoS One
- Gut inflammation can boost horizontal gene transfer between pathogenic and commensal Enterobacteriaceae
- (2012) B. Stecher et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- In-feed antibiotic effects on the swine intestinal microbiome
- (2012) T. Looft et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Shared Antibiotic Resistome of Soil Bacteria and Human Pathogens
- (2012) K. J. Forsberg et al. SCIENCE
- Comparative fecal metagenomics unveils unique functional capacity of the swine gut
- (2011) Regina Lamendella et al. BMC MICROBIOLOGY
- Counting absolute numbers of molecules using unique molecular identifiers
- (2011) Teemu Kivioja et al. NATURE METHODS
- VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors
- (2011) L. Chen et al. NUCLEIC ACIDS RESEARCH
- Detection and quantification of rare mutations with massively parallel sequencing
- (2011) I. Kinde et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Updated Functional Classification of -Lactamases
- (2009) K. Bush et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Evidence of Increasing Antibiotic Resistance Gene Abundances in Archived Soils since 1940
- (2009) Charles W. Knapp et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing
- (2009) Andreas Gnirke et al. NATURE BIOTECHNOLOGY
- Associations between Antimicrobial Resistance Genes in Fecal Generic Escherichia coli Isolates from Cow-Calf Herds in Western Canada
- (2008) S. P. Gow et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity
- (2008) Stephen J Bent et al. ISME Journal
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More