标题
Metagenomics for pathogen detection in public health
作者
关键词
Clostridium Difficile Infection, Pathogen Detection, Syndromic Surveillance, Multiple Displacement Amplification, Torque Teno Virus
出版物
Genome Medicine
Volume 5, Issue 9, Pages 81
出版商
Springer Nature
发表日期
2013-09-20
DOI
10.1186/gm485
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Implications of the Human Microbiome Project for Epidemiology
- (2013) Betsy Foxman et al. AMERICAN JOURNAL OF EPIDEMIOLOGY
- Widespread Colonization of the Lung byTropheryma whippleiin HIV Infection
- (2013) Catherine Lozupone et al. AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE
- Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities
- (2013) Migun Shakya et al. ENVIRONMENTAL MICROBIOLOGY
- The proof of concept that culturomics can be superior to metagenomics to study atypical stool samples
- (2013) G. Dubourg et al. EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES
- Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform
- (2013) J. S. McLean et al. GENOME RESEARCH
- Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture
- (2013) H. M. B. Seth-Smith et al. GENOME RESEARCH
- A Culture-Independent Sequence-Based Metagenomics Approach to the Investigation of an Outbreak of Shiga-Toxigenic Escherichia coli O104:H4
- (2013) Nicholas J. Loman et al. JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION
- Metagenomics, Infectious Disease Diagnostics, and Outbreak Investigations
- (2013) David A. Relman JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION
- A gut prediction
- (2013) Willem M. de Vos et al. NATURE
- Gut metagenome in European women with normal, impaired and diabetic glucose control
- (2013) Fredrik H. Karlsson et al. NATURE
- Metagenomic Analysis of Tuberculosis in a Mummy
- (2013) Jacqueline Z.-M. Chan et al. NEW ENGLAND JOURNAL OF MEDICINE
- Human Infection with a Novel Avian-Origin Influenza A (H7N9) Virus
- (2013) Rongbao Gao et al. NEW ENGLAND JOURNAL OF MEDICINE
- Identification of a Novel Human Papillomavirus by Metagenomic Analysis of Samples from Patients with Febrile Respiratory Illness
- (2013) John L. Mokili et al. PLoS One
- The Genome Sequence of Lone Star Virus, a Highly Divergent Bunyavirus Found in the Amblyomma americanum Tick
- (2013) Andrea Swei et al. PLoS One
- Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum
- (2013) J. S. McLean et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Hybrid DNA virus in Chinese patients with seronegative hepatitis discovered by deep sequencing
- (2013) B. Xu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Metagenomic identification of viral pathogens
- (2013) Kyle Bibby TRENDS IN BIOTECHNOLOGY
- The emerging world of the fungal microbiome
- (2013) Gary B. Huffnagle et al. TRENDS IN MICROBIOLOGY
- Metagenomic sequencing of “HPV-negative” condylomas detects novel putative HPV types
- (2013) Hanna Johansson et al. VIROLOGY
- Detection of African swine fever virus-like sequences in ponds in the Mississippi Delta through metagenomic sequencing
- (2013) Xiu-Feng Wan et al. VIRUS GENES
- Molecular tools for deciphering the microbial community structure and diversity in rumen ecosystem
- (2012) Sunil Kumar Sirohi et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers
- (2012) Michael Quail et al. BMC GENOMICS
- Metagenomics: microbial diversity through a scratched lens
- (2012) Ben Temperton et al. CURRENT OPINION IN MICROBIOLOGY
- A framework for human microbiome research
- (2012) NATURE
- A metagenome-wide association study of gut microbiota in type 2 diabetes
- (2012) Junjie Qin et al. NATURE
- High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity
- (2012) Nicholas J. Loman et al. NATURE REVIEWS MICROBIOLOGY
- The keystone-pathogen hypothesis
- (2012) George Hajishengallis et al. NATURE REVIEWS MICROBIOLOGY
- The changing face of pathogen discovery and surveillance
- (2012) W. Ian Lipkin NATURE REVIEWS MICROBIOLOGY
- Isolation of a Novel Coronavirus from a Man with Pneumonia in Saudi Arabia
- (2012) Ali M. Zaki et al. NEW ENGLAND JOURNAL OF MEDICINE
- MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads
- (2012) Toshiaki Namiki et al. NUCLEIC ACIDS RESEARCH
- Amplification by PCR Artificially Reduces the Proportion of the Rare Biosphere in Microbial Communities
- (2012) Juan M. Gonzalez et al. PLoS One
- Resolution and Characterization of Distinct cpn60-Based Subgroups of Gardnerella vaginalis in the Vaginal Microbiota
- (2012) Teenus Paramel Jayaprakash et al. PLoS One
- The Chaperonin-60 Universal Target Is a Barcode for Bacteria That Enables De Novo Assembly of Metagenomic Sequence Data
- (2012) Matthew G. Links et al. PLoS One
- Insights from Characterizing Extinct Human Gut Microbiomes
- (2012) Raul Y. Tito et al. PLoS One
- Interactions Between Commensal Fungi and the C-Type Lectin Receptor Dectin-1 Influence Colitis
- (2012) I. D. Iliev et al. SCIENCE
- Microbiota-Targeted Therapies: An Ecological Perspective
- (2012) K. P. Lemon et al. Science Translational Medicine
- Metagenomics and future perspectives in virus discovery
- (2012) John L Mokili et al. Current Opinion in Virology
- Bioinformatics for the Human Microbiome Project
- (2012) Dirk Gevers et al. PLoS Computational Biology
- Microbial Co-occurrence Relationships in the Human Microbiome
- (2012) Karoline Faust et al. PLoS Computational Biology
- Routine Use of Microbial Whole Genome Sequencing in Diagnostic and Public Health Microbiology
- (2012) Claudio U. Köser et al. PLoS Pathogens
- A Novel Rhabdovirus Associated with Acute Hemorrhagic Fever in Central Africa
- (2012) Gilda Grard et al. PLoS Pathogens
- Systematic Review of Intestinal Microbiota Transplantation (Fecal Bacteriotherapy) for Recurrent Clostridium difficile Infection
- (2011) Ethan Gough et al. CLINICAL INFECTIOUS DISEASES
- Insights into antibiotic resistance through metagenomic approaches
- (2011) Robert Schmieder et al. Future Microbiology
- Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma
- (2011) M. Castellarin et al. GENOME RESEARCH
- Diagnostic Strategy Used To Establish Etiologies of Encephalitis in a Prospective Cohort of Patients in England
- (2011) H. E. Ambrose et al. JOURNAL OF CLINICAL MICROBIOLOGY
- A draft genome of Yersinia pestis from victims of the Black Death
- (2011) Kirsten I. Bos et al. NATURE
- Sequence-specific error profile of Illumina sequencers
- (2011) Kensuke Nakamura et al. NUCLEIC ACIDS RESEARCH
- Stalking the Fourth Domain in Metagenomic Data: Searching for, Discovering, and Interpreting Novel, Deep Branches in Marker Gene Phylogenetic Trees
- (2011) Dongying Wu et al. PLoS One
- The Sensitivity of Massively Parallel Sequencing for Detecting Candidate Infectious Agents Associated with Human Tissue
- (2011) Richard A. Moore et al. PLoS One
- DNA Extraction Columns Contaminated with Murine Sequences
- (2011) Otto Erlwein et al. PLoS One
- Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies
- (2011) Patrick D. Schloss et al. PLoS One
- Exploring the viral world through metagenomics
- (2011) Karyna Rosario et al. Current Opinion in Virology
- Are diagnostic and public health bacteriology ready to become branches of genomic medicine?
- (2011) Mark J Pallen et al. Genome Medicine
- The Fecal Viral Flora of Wild Rodents
- (2011) Tung G. Phan et al. PLoS Pathogens
- Metagenomic Analysis of Fever, Thrombocytopenia and Leukopenia Syndrome (FTLS) in Henan Province, China: Discovery of a New Bunyavirus
- (2011) Bianli Xu et al. PLoS Pathogens
- Role of hospital surfaces in the transmission of emerging health care-associated pathogens: Norovirus, Clostridium difficile, and Acinetobacter species
- (2010) David J. Weber et al. AMERICAN JOURNAL OF INFECTION CONTROL
- A survey of sequence alignment algorithms for next-generation sequencing
- (2010) H. Li et al. BRIEFINGS IN BIOINFORMATICS
- Enterobacteriaceae Act in Concert with the Gut Microbiota to Induce Spontaneous and Maternally Transmitted Colitis
- (2010) Wendy S. Garrett et al. Cell Host & Microbe
- Metagenomic sequencing for virus identification in a public-health setting
- (2010) S. Svraka et al. JOURNAL OF GENERAL VIROLOGY
- Assessment of protozoa in Yunnan Yellow Cattle rumen based on the 18S rRNA sequences
- (2010) J. Leng et al. MOLECULAR BIOLOGY REPORTS
- Reference-Free Validation of Short Read Data
- (2010) Jan Schröder et al. PLoS One
- A Metagenomic Analysis of Pandemic Influenza A (2009 H1N1) Infection in Patients from North America
- (2010) Alexander L. Greninger et al. PLoS One
- Pyrosequencing of the Chaperonin-60 Universal Target as a Tool for Determining Microbial Community Composition
- (2009) J. Schellenberg et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Microbial community profiling for human microbiome projects: Tools, techniques, and challenges
- (2009) M. Hamady et al. GENOME RESEARCH
- Comparison of Automated Microarray Detection with Real-Time PCR Assays for Detection of Respiratory Viruses in Specimens Obtained from Children
- (2009) F. Raymond et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Multiplex PCR tests sentinel the appearance of pandemic influenza viruses including H1N1 swine influenza
- (2009) James B. Mahony et al. JOURNAL OF CLINICAL VIROLOGY
- Laboratory procedures to generate viral metagenomes
- (2009) Rebecca V Thurber et al. Nature Protocols
- Discovery of a Novel Single-Stranded DNA Virus from a Sea Turtle Fibropapilloma by Using Viral Metagenomics
- (2008) T. F. F. Ng et al. JOURNAL OF VIROLOGY
- Global trends in emerging infectious diseases
- (2008) Kate E. Jones et al. NATURE
- Metagenomic Analysis of Human Diarrhea: Viral Detection and Discovery
- (2008) Stacy R. Finkbeiner et al. PLoS Pathogens
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now