Connectivity to the surface determines diversity patterns in subsurface aquifers of the Fennoscandian shield

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

Long-term Investigation of Sr- Isotope and Rare Earth Element Fractionation Processes Within Three Major Aquifers in the Äspö Hard Rock Laboratory (Sweden)

(2015) Manussawee Hengsuwan et al.   GEOMICROBIOLOGY JOURNAL

An Imaging Mass Spectrometry Study on the Formation of Conditioning Films and Biofilms in the Subsurface (Äspö Hard Rock Laboratory, SE Sweden)

(2015) Tim Leefmann et al.   GEOMICROBIOLOGY JOURNAL

Diversity of Iron Oxidizing and Reducing Bacteria in Flow Reactors in the Äspö Hard Rock Laboratory

(2015) Danny Ionescu et al.   GEOMICROBIOLOGY JOURNAL

Organic Compounds and Conditioning Films Within Deep Rock Fractures of the Äspö Hard Rock Laboratory, Sweden

(2015) Nadine Schäfer et al.   GEOMICROBIOLOGY JOURNAL

Microbial Community Composition and Diversity via 16S rRNA Gene Amplicons: Evaluating the Illumina Platform

(2015) Lucas Sinclair et al.   PLoS One

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Heterotrophic Communities Supplied by Ancient Organic Carbon Predominate in Deep Fennoscandian Bedrock Fluids

(2014) Lotta Purkamo et al.   MICROBIAL ECOLOGY

Oxygenic photosynthesis as a protection mechanism for cyanobacteria against iron-encrustation in environments with high Fe2+ concentrations

(2014) Danny Ionescu et al.   Frontiers in Microbiology

Weighing the deep continental biosphere

(2013) Sean McMahon et al.   FEMS MICROBIOLOGY ECOLOGY

Sulfur oxidizers dominate carbon fixation at a biogeochemical hot spot in the dark ocean

(2013) Timothy E Mattes et al.   ISME Journal

Metagenomic insights into strategies of carbon conservation and unusual sulfur biogeochemistry in a hypersaline Antarctic lake

(2013) Sheree Yau et al.   ISME Journal

Taxonomically and functionally diverse microbial communities in deep crystalline rocks of the Fennoscandian shield

(2013) Mari Nyyssönen et al.   ISME Journal

Microbial life under extreme energy limitation

(2013) Tori M. Hoehler et al.   NATURE REVIEWS MICROBIOLOGY

Small Genomes and Sparse Metabolisms of Sediment-Associated Bacteria from Four Candidate Phyla

(2013) R. S. Kantor et al.   mBio

The Deep, Dark Energy Biosphere: Intraterrestrial Life on Earth

(2012) Katrina J. Edwards et al.   Annual Review of Earth and Planetary Sciences

Subterranean microbial populations metabolize hydrogen and acetate under in situ conditions in granitic groundwater at 450 m depth in the Äspö Hard Rock Laboratory, Sweden

(2012) Karsten Pedersen   FEMS MICROBIOLOGY ECOLOGY

Ancient microbial activity recorded in fracture fillings from granitic rocks (Äspö Hard Rock Laboratory, Sweden)

(2012) C. HEIM et al.   Geobiology

Distinct and diverse anaerobic bacterial communities in boreal lakes dominated by candidate division OD1

(2012) Sari Peura et al.   ISME Journal

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Microbial and Chemical Characterization of Underwater Fresh Water Springs in the Dead Sea

(2012) Danny Ionescu et al.   PLoS One

Shrinking majority of the deep biosphere

(2012) B. B. Jorgensen   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla

(2012) K. C. Wrighton et al.   SCIENCE

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Large Scale Library Generation for High Throughput Sequencing

(2011) Erik Borgström et al.   PLoS One

Deep subseafloor microbial cells on physiological standby

(2011) B. B. Jorgensen   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sulfur Metabolisms in Epsilon- and Gamma-Proteobacteria in Deep-Sea Hydrothermal Fields

(2011) Masahiro Yamamoto et al.   Frontiers in Microbiology

Abundance and Diversity of Biofilms in Natural and Artificial Aquifers of the Äspö Hard Rock Laboratory, Sweden

(2010) Sara Jägevall et al.   MICROBIAL ECOLOGY

Increased Throughput by Parallelization of Library Preparation for Massive Sequencing

(2010) Sverker Lundin et al.   PLoS One

Marinicella litoralis gen. nov., sp. nov., a gammaproteobacterium isolated from coastal seawater

(2009) L. A. Romanenko et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Bacteriophage lytic to Desulfovibrio aespoeensis isolated from deep groundwater

(2009) Hallgerd S C Eydal et al.   ISME Journal

Initial community evenness favours functionality under selective stress

(2009) Lieven Wittebolle et al.   NATURE

Site descriptive modelling during characterization for a geological repository for nuclear waste in Sweden

(2008) A. Ström et al.   APPLIED GEOCHEMISTRY

Characterization of microbial processes in deep aquifers of the Fennoscandian Shield

(2008) Lotta Hallbeck et al.   APPLIED GEOCHEMISTRY

Paleohydrogeological events recorded by stable isotopes, fluid inclusions and trace elements in fracture minerals in crystalline rock, Simpevarp area, SE Sweden

(2008) Henrik Drake et al.   APPLIED GEOCHEMISTRY

CONSEQUENCES OF DOMINANCE: A REVIEW OF EVENNESS EFFECTS ON LOCAL AND REGIONAL ECOSYSTEM PROCESSES

(2008) Helmut Hillebrand et al.   ECOLOGY

Deep-sea vent chemoautotrophs: diversity, biochemistry and ecological significance

(2008) Satoshi Nakagawa et al.   FEMS MICROBIOLOGY ECOLOGY

Viruses in granitic groundwater from 69 to 450 m depth of the Äspö hard rock laboratory, Sweden

(2008) Jennifer E Kyle et al.   ISME Journal

Metagenome analysis of an extreme microbial symbiosis reveals eurythermal adaptation and metabolic flexibility

(2008) J. J. Grzymski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA