Identifying predictive features of Clostridium difficile infection recurrence before, during, and after primary antibiotic treatment

Gut microbiome predictors of treatment response and recurrence in primaryClostridium difficileinfection

(2016) S. Khanna et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

RecurrentClostridium difficileinfection associates with distinct bile acid and microbiome profiles

(2016) J. R. Allegretti et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Signaling in Host-Associated Microbial Communities

(2016) Michael A. Fischbach et al.   CELL

Recurrence and death after Clostridium difficile infection: gender-dependant influence of proton pump inhibitor therapy

(2016) Ophélie Dos Santos-Schaller et al.   SpringerPlus

An Integrated Metabolomic and Microbiome Analysis Identified Specific Gut Microbiota Associated with Fecal Cholesterol and Coprostanol in Clostridium difficile Infection

(2016) Vijay C. Antharam et al.   PLoS One

The First Two Clostridium difficile Ribotype 027/ST1 Isolates Identified in Beijing, China–an Emerging Problem or a Neglected Threat?

(2016) Jing-Wei Cheng et al.   Scientific Reports

Normalization of Host Intestinal Mucus Layers Requires Long-Term Microbial Colonization

(2015) Malin E.V. Johansson et al.   Cell Host & Microbe

Epidemiology, outcomes, and predictors of mortality in hospitalized adults with Clostridium difficile infection

(2015) Sahil Khanna et al.   Internal and Emergency Medicine

Burden of Clostridium difficile Infection in the United States

(2015)   NEW ENGLAND JOURNAL OF MEDICINE

Clostridium difficile and the microbiota

(2014) Anna M. Seekatz et al.   JOURNAL OF CLINICAL INVESTIGATION

Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile

(2014) Charlie G. Buffie et al.   NATURE

Microbiome Data Distinguish Patients with Clostridium difficile Infection and Non-C. difficile-Associated Diarrhea from Healthy Controls

(2014) A. M. Schubert et al.   mBio

Antibiotic-induced shifts in the mouse gut microbiome and metabolome increase susceptibility to Clostridium difficile infection

(2014) Casey M. Theriot et al.   Nature Communications

Clinical Factors Associated With Development of Severe-Complicated Clostridium difficile Infection

(2013) Raina Shivashankar et al.   Clinical Gastroenterology and Hepatology

Intestinal Dysbiosis and Depletion of Butyrogenic Bacteria in Clostridium difficile Infection and Nosocomial Diarrhea

(2013) V. C. Antharam et al.   JOURNAL OF CLINICAL MICROBIOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Clostridium difficile infection: management strategies for a difficult disease

(2013) Sahil Khanna et al.   Therapeutic Advances in Gastroenterology

Systematic review: faecal transplantation for the treatment of Clostridium difficile-associated disease

(2012) B. Guo et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Should We Standardize the 1,700-Year-Old Fecal Microbiota Transplantation?

(2012) Faming Zhang et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Risk of Clostridium difficile Infection With Acid Suppressing Drugs and Antibiotics: Meta-Analysis

(2012) Chun Shing Kwok et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Suppression of Clostridium difficile in the Gastrointestinal Tracts of Germfree Mice Inoculated with a Murine Isolate from the Family Lachnospiraceae

(2012) Angela E. Reeves et al.   INFECTION AND IMMUNITY

Treatment failure and recurrence of Clostridium difficile infection following treatment with vancomycin or metronidazole: a systematic review of the evidence

(2012) Konstantinos Z. Vardakas et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Clostridium difficile: A European perspective

(2012) A.M. Jones et al.   JOURNAL OF INFECTION

Clostridium difficile Infection: New Insights Into Management

(2012) Sahil Khanna et al.   MAYO CLINIC PROCEEDINGS

The intestinal microbiota dysbiosis and Clostridium difficile infection: is there a relationship with inflammatory bowel disease?

(2012) Justyna Bien et al.   Therapeutic Advances in Gastroenterology

Colonic microbiota alters host susceptibility to infectious colitis by modulating inflammation, redox status, and ion transporter gene expression

(2011) S. Ghosh et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

The effect of hospital-acquired infection with Clostridium difficile on length of stay in hospital

(2011) A. J. Forster et al.   CANADIAN MEDICAL ASSOCIATION JOURNAL

Antibiotic Treatment Alters the Colonic Mucus Layer and Predisposes the Host to ExacerbatedCitrobacter rodentium-Induced Colitis

(2011) M. Wlodarska et al.   INFECTION AND IMMUNITY

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

The growing incidence and severity ofClostridium difficileinfection in inpatient and outpatient settings

(2010) Sahil Khanna et al.   Expert Review of Gastroenterology & Hepatology

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Health Care–AssociatedClostridium difficileInfection in Adults Admitted to Acute Care Hospitals in Canada: A Canadian Nosocomial Infection Surveillance Program Study

(2009) Denise Gravel et al.   CLINICAL INFECTIOUS DISEASES

Predictors of serious complications due toClostridium difficileinfection

(2008) D. GUJJA et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Bile Salts and Glycine as Cogerminants for Clostridium difficile Spores

(2008) J. A. Sorg et al.   JOURNAL OF BACTERIOLOGY

Decreased Diversity of the Fecal Microbiome in RecurrentClostridium difficile–Associated Diarrhea

(2008) Ju Young Chang et al.   JOURNAL OF INFECTIOUS DISEASES

Metabonomic and Microbiological Analysis of the Dynamic Effect of Vancomycin-Induced Gut Microbiota Modification in the Mouse

(2008) Ivan K. S. Yap et al.   JOURNAL OF PROTEOME RESEARCH

Clostridium difficile— More Difficult Than Ever

(2008) Ciarán P. Kelly et al.   NEW ENGLAND JOURNAL OF MEDICINE