Feed in summer, rest in winter: microbial carbon utilization in forest topsoil

Long-Term Warming Alters Carbohydrate Degradation Potential in Temperate Forest Soils

(2016) Grace Pold et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identification of microbial populations driving biopolymer degradation in acidic peatlands by metatranscriptomic analysis

(2016) Anastasia A. Ivanova et al.   MOLECULAR ECOLOGY

Dead fungal mycelium in forest soil represents a decomposition hotspot and a habitat for a specific microbial community

(2016) Vendula Brabcová et al.   NEW PHYTOLOGIST

Assimilation of microbial and plant carbon by active prokaryotic and fungal populations in glacial forefields

(2016) Thomas Rime et al.   SOIL BIOLOGY & BIOCHEMISTRY

Cellulose and hemicellulose decomposition by forest soil bacteria proceeds by the action of structurally variable enzymatic systems

(2016) Rubén López-Mondéjar et al.   Scientific Reports

Functional screening of abundant bacteria from acidic forest soil indicates the metabolic potential of Acidobacteria subdivision 1 for polysaccharide decomposition

(2015) Salvador Lladó et al.   BIOLOGY AND FERTILITY OF SOILS

Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter

(2015) Lucia Žifčáková et al.   ENVIRONMENTAL MICROBIOLOGY

Long-term effects of timber harvesting on hemicellulolytic microbial populations in coniferous forest soils

(2015) Hilary T C Leung et al.   ISME Journal

Temporal variation of Bistorta vivipara -associated ectomycorrhizal fungal communities in the High Arctic

(2015) Sunil Mundra et al.   MOLECULAR ECOLOGY

Revisiting the ‘Gadgil effect’: do interguild fungal interactions control carbon cycling in forest soils?

(2015) Christopher W. Fernandez et al.   NEW PHYTOLOGIST

The bacterial community inhabiting temperate deciduous forests is vertically stratified and undergoes seasonal dynamics

(2015) Rubén López-Mondéjar et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial community composition shapes enzyme patterns in topsoil and subsoil horizons along a latitudinal transect in Western Siberia

(2015) Jörg Schnecker et al.   SOIL BIOLOGY & BIOCHEMISTRY

Forest floor community metatranscriptomes identify fungal and bacterial responses to N deposition in two maple forests

(2015) Cedar N. Hesse et al.   Frontiers in Microbiology

Genomic Potential for Polysaccharide Deconstruction in Bacteria

(2014) Renaud Berlemont et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Ectomycorrhizal fungi - potential organic matter decomposers, yet not saprotrophs

(2014) Björn D. Lindahl et al.   NEW PHYTOLOGIST

diArk – the database for eukaryotic genome and transcriptome assemblies in 2014

(2014) Martin Kollmar et al.   NUCLEIC ACIDS RESEARCH

Comparison of Seasonal Soil Microbial Process in Snow-Covered Temperate Ecosystems of Northern China

(2014) Xinyue Zhang et al.   PLoS One

Tackling soil diversity with the assembly of large, complex metagenomes

(2014) Adina Chuang Howe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global soil carbon: understanding and managing the largest terrestrial carbon pool

(2014) Jörn PW Scharlemann et al.   Carbon Management

Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

(2013) Anthony Levasseur et al.   Biotechnology for Biofuels

Tree species influence on microbial communities in litter and soil: Current knowledge and research needs

(2013) Cindy E. Prescott et al.   FOREST ECOLOGY AND MANAGEMENT

Seasonal dynamics of fungal communities in a temperate oak forest soil

(2013) Jana Voříšková et al.   NEW PHYTOLOGIST

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Roots and Associated Fungi Drive Long-Term Carbon Sequestration in Boreal Forest

(2013) K. E. Clemmensen et al.   SCIENCE

Identification of Cellulose-Responsive Bacterial and Fungal Communities in Geographically and Edaphically Different Soils by Using Stable Isotope Probing

(2012) Stephanie A. Eichorst et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Effects of season and experimental warming on the bacterial community in a temperate mountain forest soil assessed by 16S rRNA gene pyrosequencing

(2012) Melanie Kuffner et al.   FEMS MICROBIOLOGY ECOLOGY

Cellulose utilization in forest litter and soil: identification of bacterial and fungal decomposers

(2012) Martina Štursová et al.   FEMS MICROBIOLOGY ECOLOGY

Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions

(2012) Thomas Schneider et al.   ISME Journal

Seasonal trends in the biomass and structure of bryophyte-associated fungal communities explored by 454 pyrosequencing

(2012) Marie L. Davey et al.   NEW PHYTOLOGIST

Metatranscriptomics Reveals the Diversity of Genes Expressed by Eukaryotes in Forest Soils

(2012) Coralie Damon et al.   PLoS One

Scaling metagenome sequence assembly with probabilistic de Bruijn graphs

(2012) J. Pell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

(2012) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Responses of the extracellular enzyme activities in hardwood forest to soil temperature and seasonality and the potential effects of climate change

(2012) Petr Baldrian et al.   SOIL BIOLOGY & BIOCHEMISTRY

Active and total microbial communities in forest soil are largely different and highly stratified during decomposition

(2011) Petr Baldrian et al.   ISME Journal

Are root exudates more important than other sources of rhizodeposits in structuring rhizosphere bacterial communities?

(2010) Paul G. Dennis et al.   FEMS MICROBIOLOGY ECOLOGY

Seasonality and resource availability control bacterial and archaeal communities in soils of a temperate beech forest

(2010) Frank Rasche et al.   ISME Journal

Massively parallel 454-sequencing of fungal communities inQuercusspp. ectomycorrhizas indicates seasonal dynamics in urban and rural sites

(2010) ARI JUMPPONEN et al.   MOLECULAR ECOLOGY

Belowground carbon allocation by trees drives seasonal patterns of extracellular enzyme activities by altering microbial community composition in a beech forest soil

(2010) Christina Kaiser et al.   NEW PHYTOLOGIST

Quantification of effects of season and nitrogen supply on tree below-ground carbon transfer to ectomycorrhizal fungi and other soil organisms in a boreal pine forest

(2010) Mona N. Högberg et al.   NEW PHYTOLOGIST

Fungal carbohydrate support in the ectomycorrhizal symbiosis: a review

(2010) U. Nehls et al.   PLANT BIOLOGY

Fungi Unearthed: Transcripts Encoding Lignocellulolytic and Chitinolytic Enzymes in Forest Soil

(2010) Harald Kellner et al.   PLoS One

Priming effects: Interactions between living and dead organic matter

(2010) Yakov Kuzyakov   SOIL BIOLOGY & BIOCHEMISTRY

Differential Utilization of Carbon Substrates by Bacteria and Fungi in Tundra Soil

(2009) R. Rinnan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses

(2009) Ryan T Jones et al.   ISME Journal

Class I  -Mannosidases Are Required for N-Glycan Processing and Root Development in Arabidopsis thaliana

(2009) E. Liebminger et al.   PLANT CELL

Beech carbon productivity as driver of ectomycorrhizal abundance and diversity

(2009) CHRISTINE DRUEBERT et al.   PLANT CELL AND ENVIRONMENT

Coding region structural heterogeneity and turnover of transcription start sites contribute to divergence in expression between duplicate genes

(2009) Chungoo Park et al.   GENOME BIOLOGY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Influence of temperature and soil water content on bacterial, archaeal and denitrifying microbial communities in drained fen grassland soil microcosms

(2008) Blaž Stres et al.   FEMS MICROBIOLOGY ECOLOGY

Decomposers in disguise: mycorrhizal fungi as regulators of soil C dynamics in ecosystems under global change

(2008) J. M. Talbot et al.   FUNCTIONAL ECOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Seasonal variation in enzyme activities and temperature sensitivities in Arctic tundra soils

(2008) MATTHEW D. WALLENSTEIN et al.   GLOBAL CHANGE BIOLOGY

Mastering ectomycorrhizal symbiosis: the impact of carbohydrates

(2008) U. Nehls   JOURNAL OF EXPERIMENTAL BOTANY

Season and soil management affect soil microbial communities estimated using phospholipid fatty acid analysis in a continuous cabbage (Brassica oleraceavar.capitata) cropping system

(2008) Hiroyasu Tabuchi et al.   SOIL SCIENCE AND PLANT NUTRITION