Specimen-level phylogenetics in paleontology using the Fossilized Birth-Death model with sampled ancestors

The largest thalattosuchian (Crocodylomorpha) supports teleosaurid survival across the Jurassic-Cretaceous boundary

(2016) Federico Fanti et al.   CRETACEOUS RESEARCH

A large-clawed theropod (Dinosauria: Tetanurae) from the Lower Cretaceous of Australia and the Gondwanan origin of megaraptorid theropods

(2016) Phil R. Bell et al.   GONDWANA RESEARCH

Why so many dipnoans? A multidisciplinary approach on the Lower Cretaceous lungfish record from Tunisia

(2016) Federico Fanti et al.   PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY

Bayesian Total-Evidence Dating Reveals the Recent Crown Radiation of Penguins

(2016) Alexandra Gavryushkina et al.   SYSTEMATIC BIOLOGY

Evidence for a Mid-Jurassic Adaptive Radiation in Mammals

(2015) Roger A. Close et al.   CURRENT BIOLOGY

Morphological Phylogenetics in the Genomic Age

(2015) Michael S.Y. Lee et al.   CURRENT BIOLOGY

RASP (Reconstruct Ancestral State in Phylogenies): A tool for historical biogeography

(2015) Yan Yu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

New Information on Tataouinea hannibalis from the Early Cretaceous of Tunisia and Implications for the Tempo and Mode of Rebbachisaurid Sauropod Evolution

(2015) Federico Fanti et al.   PLoS One

Bayesian analysis of a morphological supermatrix sheds light on controversial fossil hominin relationships

(2015) Mana Dembo et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

High evolutionary rates and the origin of the Rosso Ammonitico Veronese Formation (Middle-Upper Jurassic of Italy) reptiles

(2015) Andrea Cau et al.   HISTORICAL BIOLOGY

A specimen-level phylogenetic analysis and taxonomic revision of Diplodocidae (Dinosauria, Sauropoda)

(2015) Emanuel Tschopp et al.   PeerJ

Integrating palaeoecology and morphology in theropod diversity estimation: A case from the Aptian-Albian of Tunisia

(2014) Federico Fanti et al.   PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY

Bayesian Analysis Using a Simple Likelihood Model Outperforms Parsimony for Estimation of Phylogeny from Discrete Morphological Data

(2014) April M. Wright et al.   PLoS One

The fossilized birth-death process for coherent calibration of divergence-time estimates

(2014) T. A. Heath et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary trends in Triceratops from the Hell Creek Formation, Montana

(2014) J. B. Scannella et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sustained miniaturization and anatomical innovation in the dinosaurian ancestors of birds

(2014) M. S. Y. Lee et al.   SCIENCE

Morphological Clocks in Paleontology, and a Mid-Cretaceous Origin of Crown Aves

(2014) M. S. Y. Lee et al.   SYSTEMATIC BIOLOGY

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Bayesian Inference of Sampled Ancestor Trees for Epidemiology and Fossil Calibration

(2014) Alexandra Gavryushkina et al.   PLoS Computational Biology

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Birth-death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV)

(2012) T. Stadler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Total-Evidence Approach to Dating with Fossils, Applied to the Early Radiation of the Hymenoptera

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Divergence Time Estimation Using Fossils as Terminal Taxa and the Origins of Lissamphibia

(2011) R. Alexander Pyron   SYSTEMATIC BIOLOGY

Sampling-through-time in birth–death trees

(2010) Tanja Stadler   JOURNAL OF THEORETICAL BIOLOGY