The evolutionary history of plant T2/S-type ribonucleases

RWTY (R We There Yet): An R package for examining convergence of Bayesian phylogenetic analyses

(2017) Dan L. Warren et al.   MOLECULAR BIOLOGY AND EVOLUTION

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV

(2016)   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Insights into thePrunus-Specific S-RNase-Based Self-Incompatibility System from a Genome-Wide Analysis of the Evolutionary Radiation ofSLocus-Related F-box Genes

(2016) Takashi Akagi et al.   PLANT AND CELL PHYSIOLOGY

Distinct Self-recognition in the Prunus S-RNase-based Gametophytic Self-incompatibility System

(2016) Daiki Matsumoto et al.   Horticulture Journal

Using isoelectric point to determine the pH for initial protein crystallization trials

(2015) Jobie Kirkwood et al.   BIOINFORMATICS

No evidence for Fabaceae Gametophytic self-incompatibility being determined by Rosaceae, Solanaceae, and Plantaginaceae S-RNase lineage genes

(2015) Bruno Aguiar et al.   BMC PLANT BIOLOGY

A Comprehensive Study of Molecular Evolution at the Self-Incompatibility Locus of Rosaceae

(2015) Jahanshah Ashkani et al.   JOURNAL OF MOLECULAR EVOLUTION

Insight into S-RNase-based self-incompatibility in Petunia: recent findings and future directions

(2015) Justin S. Williams et al.   Frontiers in Plant Science

Evolutionary Analysis of Genes for S-RNase-based Self-incompatibility Reveals S Locus Duplications in the Ancestral Rosaceae

(2015) Takuya Morimoto et al.   Horticulture Journal

Gene duplication and genetic exchange drive the evolution of S-RNase-based self-incompatibility in Petunia

(2015) Ken-ichi Kubo et al.   Nature Plants

Convergent Evolution at the Gametophytic Self-Incompatibility System in Malus and Prunus

(2015) Bruno Aguiar et al.   PLoS One

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Late-acting self-incompatibility-the pariah breeding system in flowering plants

(2014) Peter E. Gibbs   NEW PHYTOLOGIST

Transcriptome Analysis Reveals the Same 17S-Locus F-BoxGenes in Two Haplotypes of the Self-Incompatibility Locus ofPetunia inflata

(2014) Justin S. Williams et al.   PLANT CELL

Structural and functional characteristics of S-like ribonucleases from carnivorous plants

(2014) Emi Nishimura et al.   PLANTA

Phylogenetic Analyses and Characterization of RNase X25 from Drosophila melanogaster Suggest a Conserved Housekeeping Role and Additional Functions for RNase T2 Enzymes in Protostomes

(2014) Linda Ambrosio et al.   PLoS One

SCFSLF-mediated cytosolic degradation of S-RNase is required for cross-pollen compatibility in S-RNase-based self-incompatibility in Petunia hybrida

(2014) Wei Liu et al.   Frontiers in Genetics

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

S-like ribonuclease gene expression in carnivorous plants

(2013) Emi Nishimura et al.   PLANTA

Secondary Evolution of a Self-Incompatibility Locus in the Brassicaceae Genus Leavenworthia

(2013) Sier-Ching Chantha et al.   PLOS BIOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Evaluation of methods for detecting conversion events in gene clusters

(2011) Giltae Song et al.   BMC BIOINFORMATICS

The Solanum lycopersicum RNaseLER is a class II enzyme of the RNase T2 family and shows preferential expression in guard cells

(2011) Sabine Köthke et al.   JOURNAL OF PLANT PHYSIOLOGY

Statistics and Truth in Phylogenomics

(2011) S. Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic Comparison of F-Box (FBX) Gene Superfamily within the Plant Kingdom Reveals Divergent Evolutionary Histories Indicative of Genomic Drift

(2011) Zhihua Hua et al.   PLoS One

Expression and Trans-Specific Polymorphism of Self-Incompatibility RNases in Coffea (Rubiaceae)

(2011) Michael D. Nowak et al.   PLoS One

RNS2, a conserved member of the RNase T2 family, is necessary for ribosomal RNA decay in plants

(2011) M. S. Hillwig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

S-RNase-like Sequences in Styles of Coffea (Rubiaceae). Evidence for S-RNase Based Gametophytic Self-Incompatibility?

(2011) E. Asquini et al.   Tropical Plant Biology

DendroPy: a Python library for phylogenetic computing

(2010) J. Sukumaran et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Petunia nectar proteins have ribonuclease activity

(2010) Melissa S. Hillwig et al.   JOURNAL OF EXPERIMENTAL BOTANY

RNase T2 genes from rice and the evolution of secretory ribonucleases in plants

(2010) Gustavo C. MacIntosh et al.   MOLECULAR GENETICS AND GENOMICS

Collaborative Non-Self Recognition System in S-RNase-Based Self-Incompatibility

(2010) K.-i. Kubo et al.   SCIENCE

Causes and evolutionary significance of genetic convergence

(2010) Pascal-Antoine Christin et al.   TRENDS IN GENETICS

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

Zebrafish RNase T2 genes and the evolution of secretory ribonucleases in animals

(2009) Melissa S Hillwig et al.   BMC EVOLUTIONARY BIOLOGY

Population genetic models of duplicated genes

(2009) Hideki Innan   GENETICA

Genetic features of a pollen-part mutation suggest an inhibitory role for the Antirrhinum pollen self-incompatibility determinant

(2009) Yongbiao Xue et al.   PLANT MOLECULAR BIOLOGY

Characterization of self-incompatibility in Campanula rapunculoides (Campanulaceae) through genetic analyses and microscopy

(2008) S. V. Good-Avila et al.   Botany

Loss of Self‐Incompatibility and Its Evolutionary Consequences

(2008) Boris Igic et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

An S-RNase-Based Gametophytic Self-Incompatibility System Evolved Only Once in Eudicots

(2008) Jorge Vieira et al.   JOURNAL OF MOLECULAR EVOLUTION

Impact of transcriptional, ABA-dependent, and ABA-independent pathways on wounding regulation of RNS1 expression

(2008) Melissa S. Hillwig et al.   MOLECULAR GENETICS AND GENOMICS

The F-Box Gene Family Is Expanded in Herbaceous Annual Plants Relative to Woody Perennial Plants

(2008) X. Yang et al.   PLANT PHYSIOLOGY

tRNA cleavage is a conserved response to oxidative stress in eukaryotes

(2008) D. M. Thompson et al.   RNA