Automatic single- and multi-label enzymatic function prediction by machine learning

Classifying Multifunctional Enzymes by Incorporating Three Different Models into Chou’s General Pseudo Amino Acid Composition

(2016) Hong-Liang Zou et al.   JOURNAL OF MEMBRANE BIOLOGY

Application of a hierarchical enzyme classification method reveals the role of gut microbiome in human metabolism

(2015) Akram Mohammed et al.   BMC GENOMICS

Classification of multi-family enzymes by multi-label machine learning and sequence-based descriptors

(2014) Yuelong Wang et al.   Analytical Methods

3D representations of amino acids—applications to protein sequence comparison and classification

(2014) Jie Li et al.   Computational and Structural Biotechnology Journal

Accurate prediction of protein enzymatic class by N-to-1 Neural Networks

(2013) Viola Volpato et al.   BMC BIOINFORMATICS

ENZPRED-Enzymatic Protein Class Predicting by Machine Learning

(2013) Kirtan Dave et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

Predicting enzymatic function from global binding site descriptors

(2013) Andrea Volkamer et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

EnzML: multi-label prediction of enzyme classes using InterPro signatures

(2012) Luna De Ferrari et al.   BMC BIOINFORMATICS

An extensive experimental comparison of methods for multi-label learning

(2012) Gjorgji Madjarov et al.   PATTERN RECOGNITION

3D entropy and moments prediction of enzyme classes and experimental-theoretic study of peptide fingerprints in Leishmania parasites

(2009) R. Concu et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Prediction of Enzyme Classes from 3D Structure: A General Model and Examples of Experimental-Theoretic Scoring of Peptide Mass Fingerprints ofLeishmaniaProteins

(2009) Riccardo Concu et al.   JOURNAL OF PROTEOME RESEARCH

Computational chemistry study of 3D-structure-function relationships for enzymes based on Markov models for protein electrostatic, HINT, and van der Waals potentials

(2008) Riccardo Concu et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Enzymes/non-enzymes classification model complexity based on composition, sequence, 3D and topological indices

(2008) Cristian Robert Munteanu et al.   JOURNAL OF THEORETICAL BIOLOGY