Reshaping Plant Biology: Qualitative and Quantitative Descriptors for Plant Morphology

Evolutionary and Environmental Forces Sculpting Leaf Development

(2016) Daniel H. Chitwood et al.   CURRENT BIOLOGY

A Mechanical Feedback Restricts Sepal Growth and Shape in Arabidopsis

(2016) Nathan Hervieux et al.   CURRENT BIOLOGY

Variable Cell Growth Yields Reproducible Organ Development through Spatiotemporal Averaging

(2016) Lilan Hong et al.   DEVELOPMENTAL CELL

Evolving technologies for growing, imaging and analyzing 3D root system architecture of crop plants

(2016) Miguel A. Piñeros et al.   Journal of Integrative Plant Biology

Optimal allocation of leaf epidermal area for gas exchange

(2016) Hugo J. de Boer et al.   NEW PHYTOLOGIST

Climate and developmental plasticity: interannual variability in grapevine leaf morphology

(2016) Daniel H Chitwood et al.   PLANT PHYSIOLOGY

Genome-wide association mapping and agronomic impact of cowpea root architecture

(2016) James D. Burridge et al.   THEORETICAL AND APPLIED GENETICS

Tools and techniques for computational reproducibility

(2016) Stephen R. Piccolo et al.   GigaScience

Mechanics of water collection in plants via morphology change of conical hairs

(2015) Fuyu Ito et al.   APPLIED PHYSICS LETTERS

A global meta-analysis of the relative extent of intraspecific trait variation in plant communities

(2015) Andrew Siefert et al.   ECOLOGY LETTERS

Towards recommendations for metadata and data handling in plant phenotyping

(2015) Paweł Krajewski et al.   JOURNAL OF EXPERIMENTAL BOTANY

Root phenotyping: from component trait in the lab to breeding: Table 1.

(2015) René C.P. Kuijken et al.   JOURNAL OF EXPERIMENTAL BOTANY

Latent developmental and evolutionary shapes embedded within the grapevine leaf

(2015) Daniel H. Chitwood et al.   NEW PHYTOLOGIST

Digital imaging of root traits (DIRT): a high-throughput computing and collaboration platform for field-based root phenomics

(2015) Abhiram Das et al.   Plant Methods

Multiscale imaging of plants: current approaches and challenges

(2015) David Rousseau et al.   Plant Methods

Quantitative Trait Locus Mapping Reveals Regions of the Maize Genome Controlling Root System Architecture

(2015) Paul R. Zurek et al.   PLANT PHYSIOLOGY

Root System Markup Language: Toward a Unified Root Architecture Description Language

(2015) Guillaume Lobet et al.   PLANT PHYSIOLOGY

Variability and constancy in cellular growth of Arabidopsis sepals

(2015) Gerardo Tauriello et al.   PLANT PHYSIOLOGY

Phene Synergism between Root Hair Length and Basal Root Growth Angle for Phosphorus Acquisition

(2015) Magalhaes Amade Miguel et al.   PLANT PHYSIOLOGY

GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems

(2015) Rubén Rellán-Álvarez et al.   eLife

Multiple pathways regulate shoot branching

(2015) Catherine Rameau et al.   Frontiers in Plant Science

DynamicRoots: A Software Platform for the Reconstruction and Analysis of Growing Plant Roots

(2015) Olga Symonova et al.   PLoS One

Branching patterns of root systems: quantitative analysis of the diversity among dicotyledonous species

(2014) Loïc Pagès   ANNALS OF BOTANY

An approach to multiscale modelling with graph grammars

(2014) Yongzhi Ong et al.   ANNALS OF BOTANY

Root anatomical phenes associated with water acquisition from drying soil: targets for crop improvement

(2014) Jonathan P. Lynch et al.   JOURNAL OF EXPERIMENTAL BOTANY

Cell Wall, Cytoskeleton, and Cell Expansion in Higher Plants

(2014) Logan Bashline et al.   Molecular Plant

Mathematical Models Light Up Plant Signaling

(2014) Y. H. Chew et al.   PLANT CELL

Root phenes that reduce the metabolic costs of soil exploration: opportunities for 21st century agriculture

(2014) JONATHAN P. LYNCH   PLANT CELL AND ENVIRONMENT

Endomembrane Trafficking Protein SEC24A Regulates Cell Size Patterning in Arabidopsis

(2014) X. Qu et al.   PLANT PHYSIOLOGY

Root Architecture Responses: In Search of Phosphate

(2014) B. Peret et al.   PLANT PHYSIOLOGY

Image-Based High-Throughput Field Phenotyping of Crop Roots

(2014) A. Bucksch et al.   PLANT PHYSIOLOGY

Root Cortical Aerenchyma Enhances Nitrogen Acquisition from Low-Nitrogen Soils in Maize

(2014) P. Saengwilai et al.   PLANT PHYSIOLOGY

Arabidopsis JAGGED links floral organ patterning to tissue growth by repressing Kip-related cell cycle inhibitors

(2014) K. Schiessl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Review of Imaging Techniques for Plant Phenotyping

(2014) Lei Li et al.   SENSORS

A Practical Introduction to Skeletons for the Plant Sciences

(2014) Alexander Bucksch   Applications in Plant Sciences

Root cortical burden influences drought tolerance in maize

(2013) Raúl E. Jaramillo et al.   ANNALS OF BOTANY

Steep, cheap and deep: an ideotype to optimize water and N acquisition by maize root systems

(2013) Jonathan P. Lynch   ANNALS OF BOTANY

Contrasting effects of plant inter- and intraspecific variation on community-level trait measures along an environmental gradient

(2013) Emilie Kichenin et al.   FUNCTIONAL ECOLOGY

A Quantitative Genetic Basis for Leaf Morphology in a Set of Precisely Defined Tomato Introgression Lines

(2013) D. H. Chitwood et al.   PLANT CELL

An online database for plant image analysis software tools

(2013) Guillaume Lobet et al.   Plant Methods

Recovering complete plant root system architectures from soil via X-ray μ-Computed Tomography

(2013) Stefan Mairhofer et al.   Plant Methods

A Modern Ampelography: A Genetic Basis for Leaf Shape and Venation Patterning in Grape

(2013) D. H. Chitwood et al.   PLANT PHYSIOLOGY

3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture

(2013) C. N. Topp et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genotypic recognition and spatial responses by rice roots

(2013) S. Fang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How Do Organs Know When They Have Reached the Right Size?

(2013) G. Vogel   SCIENCE

Advances in modeling trait-based plant community assembly

(2013) Daniel C. Laughlin et al.   TRENDS IN PLANT SCIENCE

Rethinking Community Assembly through the Lens of Coexistence Theory

(2012) J. HilleRisLambers et al.   Annual Review of Ecology Evolution and Systematics

GiA Roots: software for the high throughput analysis of plant root system architecture

(2012) Taras Galkovskyi et al.   BMC PLANT BIOLOGY

Cell cycle regulates cell type in the Arabidopsis sepal

(2012) A. H. K. Roeder et al.   DEVELOPMENT

Inter-specific and intra-specific trait variation along short environmental gradients in an old-growth temperate forest

(2012) Sébastien Auger et al.   JOURNAL OF VEGETATION SCIENCE

Root system architecture: insights from Arabidopsis and cereal crops

(2012) S. Smith et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Developmental Trajectory of Leaflet Morphology in Wild Tomato Species

(2012) D. H. Chitwood et al.   PLANT PHYSIOLOGY

Detect thy neighbor: Identity recognition at the root level in plants

(2012) Bin J.W. Chen et al.   PLANT SCIENCE

The return of the variance: intraspecific variability in community ecology

(2012) Cyrille Violle et al.   TRENDS IN ECOLOGY & EVOLUTION

L-Py: An L-System Simulation Framework for Modeling Plant Architecture Development Based on a Dynamic Language

(2012) Frédéric Boudon et al.   Frontiers in Plant Science

Genome-wide association study of leaf architecture in the maize nested association mapping population

(2011) Feng Tian et al.   NATURE GENETICS

Root Cortical Aerenchyma Enhances the Growth of Maize on Soils with Suboptimal Availability of Nitrogen, Phosphorus, and Potassium

(2011) J. A. Postma et al.   PLANT PHYSIOLOGY

Three-Dimensional Root Phenotyping with a Novel Imaging and Software Platform

(2011) R. T. Clark et al.   PLANT PHYSIOLOGY

A Novel Image-Analysis Toolbox Enabling Quantitative Analysis of Root System Architecture

(2011) Guillaume Lobet et al.   PLANT PHYSIOLOGY

RooTrak: Automated Recovery of Three-Dimensional Plant Root Architecture in Soil from X-Ray Microcomputed Tomography Images Using Visual Tracking

(2011) S. Mairhofer et al.   PLANT PHYSIOLOGY

Root Phenes for Enhanced Soil Exploration and Phosphorus Acquisition: Tools for Future Crops

(2011) J. P. Lynch   PLANT PHYSIOLOGY

Gene Coexpression Network Alignment and Conservation of Gene Modules between Two Grass Species: Maize and Rice

(2011) S. P. Ficklin et al.   PLANT PHYSIOLOGY

Nitrogen economics of root foraging: Transitive closure of the nitrate-cytokinin relay and distinct systemic signaling for N supply vs. demand

(2011) S. Ruffel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Model-assisted integration of physiological and environmental constraints affecting the dynamic and spatial patterns of root water uptake from soils

(2010) Xavier Draye et al.   JOURNAL OF EXPERIMENTAL BOTANY

Topological network alignment uncovers biological function and phylogeny

(2010) O. Kuchaiev et al.   Journal of the Royal Society Interface

Shovelomics: high throughput phenotyping of maize (Zea mays L.) root architecture in the field

(2010) Samuel Trachsel et al.   PLANT AND SOIL

Imaging and Analysis Platform for Automatic Phenotyping and Trait Ranking of Plant Root Systems

(2010) A. S. Iyer-Pascuzzi et al.   PLANT PHYSIOLOGY

SkelTre

(2010) Alexander Bucksch et al.   VISUAL COMPUTER

Variability in the Control of Cell Division Underlies Sepal Epidermal Patterning in Arabidopsis thaliana

(2010) Adrienne H. K. Roeder et al.   PLOS BIOLOGY

From genes to ecosystems: an emerging synthesis of eco-evolutionary dynamics

(2009) Joseph K. Bailey et al.   NEW PHYTOLOGIST

A dynamic model of nutrient uptake by root hairs

(2009) D. Leitner et al.   NEW PHYTOLOGIST

From genes to ecosystems: a synthesis of the effects of plant genetic factors across levels of organization

(2009) J. K. Bailey et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Growth of axile and lateral roots of maize: I development of a phenotying platform

(2009) A. Hund et al.   PLANT AND SOIL

Evolution of Allometry in Antirrhinum

(2009) X. Feng et al.   PLANT CELL

Root cortical aerenchyma improves the drought tolerance of maize (Zea maysL.)

(2009) JINMING ZHU et al.   PLANT CELL AND ENVIRONMENT

High-Throughput Quantification of Root Growth Using a Novel Image-Analysis Tool

(2009) A. French et al.   PLANT PHYSIOLOGY

Ecological consequences of genetic diversity

(2008) A. Randall Hughes et al.   ECOLOGY LETTERS

The rule-based language XL and the modelling environment GroIMP illustrated with simulated tree competition

(2008) Reinhard Hemmerling et al.   FUNCTIONAL PLANT BIOLOGY

Scaling environmental change through the community-level: a trait-based response-and-effect framework for plants

(2008) KATHARINE N. SUDING et al.   GLOBAL CHANGE BIOLOGY

PlantGL: A Python-based geometric library for 3D plant modelling at different scales

(2008) C. Pradal et al.   GRAPHICAL MODELS

Mutational spaces for leaf shape and size

(2008) Sandra Bensmihen et al.   HFSP Journal

EZ-Rhizo: integrated software for the fast and accurate measurement of root system architecture

(2008) Patrick Armengaud et al.   PLANT JOURNAL