Towards recommendations for metadata and data handling in plant phenotyping

An ontology approach to comparative phenomics in plants

(2015) Anika Oellrich et al.   Plant Methods

Finding Our Way through Phenotypes

(2015) Andrew R. Deans et al.   PLOS BIOLOGY

e!DAL - a framework to store, share and publish research data

(2014) Daniel Arend et al.   BMC BIOINFORMATICS

Mathematical Models Light Up Plant Signaling

(2014) Y. H. Chew et al.   PLANT CELL

Dissecting the Phenotypic Components of Crop Plant Growth and Drought Responses Based on High-Throughput Image Analysis

(2014) Dijun Chen et al.   PLANT CELL

High-Throughput Phenotyping to Detect Drought Tolerance QTL in Wild Barley Introgression Lines

(2014) Nora Honsdorf et al.   PLoS One

Combining high-throughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice

(2014) Wanneng Yang et al.   Nature Communications

Separating the wheat from the chaff – a strategy to utilize plant genetic resources from ex situ genebanks

(2014) Jens Keilwagen et al.   Scientific Reports

Future Scenarios for Plant Phenotyping

(2013) Fabio Fiorani et al.   Annual Review of Plant Biology

Phenoscope: an automated large-scale phenotyping platform offering high spatial homogeneity

(2013) Sébastien Tisné et al.   PLANT JOURNAL

Next-generation phenotyping: requirements and strategies for enhancing our understanding of genotype–phenotype relationships and its relevance to crop improvement

(2013) Joshua N. Cobb et al.   THEORETICAL AND APPLIED GENETICS

Cell to whole-plant phenotyping: the best is yet to come

(2013) Stijn Dhondt et al.   TRENDS IN PLANT SCIENCE

The statistical analysis of multi-environment data: modeling genotype-by-environment interaction and its genetic basis

(2013) Marcos Malosetti et al.   Frontiers in Physiology

The art of growing plants for experimental purposes: a practical guide for the plant biologist

(2012) Hendrik Poorter et al.   FUNCTIONAL PLANT BIOLOGY

GROWSCREEN-Rhizo is a novel phenotyping robot enabling simultaneous measurements of root and shoot growth for plants grown in soil-filled rhizotrons

(2012) Kerstin A. Nagel et al.   FUNCTIONAL PLANT BIOLOGY

Toward interoperable bioscience data

(2012) Susanna-Assunta Sansone et al.   NATURE GENETICS

A Comprehensive Dataset of Genes with a Loss-of-Function Mutant Phenotype in Arabidopsis

(2012) J. Lloyd et al.   PLANT PHYSIOLOGY

Natural Genetic Variation for Growth and Development Revealed by High-Throughput Phenotyping in Arabidopsis thaliana

(2012) Xu Zhang et al.   G3-Genes Genomes Genetics

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

(2011) Pelin Yilmaz et al.   NATURE BIOTECHNOLOGY

A growth phenotyping pipeline for Arabidopsis thaliana integrating image analysis and rosette area modeling for robust quantification of genotype effects

(2011) Samuel Arvidsson et al.   NEW PHYTOLOGIST

SBRML: a markup language for associating systems biology data with models

(2010) Joseph O. Dada et al.   BIOINFORMATICS

ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level

(2010) P. Rocca-Serra et al.   BIOINFORMATICS

Dissection and modelling of abiotic stress tolerance in plants

(2010) François Tardieu et al.   CURRENT OPINION IN PLANT BIOLOGY

Probing the Reproducibility of Leaf Growth and Molecular Phenotypes: A Comparison of Three Arabidopsis Accessions Cultivated in Ten Laboratories

(2010) C. Massonnet et al.   PLANT PHYSIOLOGY

Integrating phenotype ontologies across multiple species

(2010) Christopher J Mungall et al.   GENOME BIOLOGY

Xeml Lab: a tool that supports the design of experiments at a graphical interface and generates computer-readable metadata files, which capture information about genotypes, growth conditions, environmental perturbations and sampling strategy

(2009) JAN HANNEMANN et al.   PLANT CELL AND ENVIRONMENT

Semantic Similarity in Biomedical Ontologies

(2009) Catia Pesquita et al.   PLoS Computational Biology