Diurnal Transcriptome and Gene Network Represented through Sparse Modeling in Brachypodium distachyon
出版年份 2017 全文链接
标题
Diurnal Transcriptome and Gene Network Represented through Sparse Modeling in Brachypodium distachyon
作者
关键词
-
出版物
Frontiers in Plant Science
Volume 8, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2017-11-28
DOI
10.3389/fpls.2017.02055
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- The plant perceptron connects environment to development
- (2017) Ben Scheres et al. NATURE
- Expression atlas and comparative coexpression network analyses reveal important genes involved in the formation of lignified cell wall in Brachypodium distachyon
- (2017) Richard Sibout et al. NEW PHYTOLOGIST
- ARACNe-AP: gene network reverse engineering through adaptive partitioning inference of mutual information
- (2016) Alexander Lachmann et al. BIOINFORMATICS
- Genome-wide identification and evolutionary analyses of the PP2C gene family with their expression profiling in response to multiple stresses in Brachypodium distachyon
- (2016) Jianmei Cao et al. BMC GENOMICS
- Brachypodium distachyon T-DNA insertion lines: a model pathosystem to study nonhost resistance to wheat stripe rust
- (2016) Tianyue An et al. Scientific Reports
- Detection of Diurnal Variation of Tomato Transcriptome through the Molecular Timetable Method in a Sunlight-Type Plant Factory
- (2016) Takanobu Higashi et al. Frontiers in Plant Science
- A Compact Model for the Complex Plant Circadian Clock
- (2016) Joëlle De Caluwé et al. Frontiers in Plant Science
- CoExpNetViz: Comparative Co-Expression Networks Construction and Visualization Tool
- (2016) Oren Tzfadia et al. Frontiers in Plant Science
- Emerging Roles of Strigolactones in Plant Responses to Stress and Development
- (2016) Amita Pandey et al. Frontiers in Plant Science
- Analysis of Genomic Sequence Motifs for Deciphering Transcription Factor Binding and Transcriptional Regulation in Eukaryotic Cells
- (2016) Valentina Boeva Frontiers in Genetics
- Knockdown of Ice-Binding Proteins in Brachypodium distachyon Demonstrates Their Role in Freeze Protection
- (2016) Melissa Bredow et al. PLoS One
- Comparative Analysis of Gene Regulatory Networks: From Network Reconstruction to Evolution
- (2015) Dawn Thompson et al. Annual Review of Cell and Developmental Biology
- Brachypodium distachyonas a Genetic Model System
- (2015) Elizabeth A. Kellogg Annual Review of Genetics
- Reverse Engineering of Genome-wide Gene Regulatory Networks from Gene Expression Data
- (2015) Zhi-Ping Liu CURRENT GENOMICS
- Punctual Transcriptional Regulation by the Rice Circadian Clock under Fluctuating Field Conditions
- (2015) Jun Matsuzaki et al. PLANT CELL
- Cell wall composition and digestibility alterations in Brachypodium distachyon achieved through reduced expression of the UDP-arabinopyranose mutase
- (2015) David M. Rancour et al. Frontiers in Plant Science
- Circadian regulation of abiotic stress tolerance in plants
- (2015) Jack Grundy et al. Frontiers in Plant Science
- Circadian rhythms and post-transcriptional regulation in higher plants
- (2015) Andrés Romanowski et al. Frontiers in Plant Science
- Downstream of the plant circadian clock: output pathways for the control of physiology and development
- (2015) Sally Adams et al. Essays in Biochemistry
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Adaptation to the Local Environment by Modifications of the Photoperiod Response in Crops
- (2014) Norihito Nakamichi PLANT AND CELL PHYSIOLOGY
- An overview of the gene regulatory network controlling trichome development in the model plant, Arabidopsis
- (2014) Sitakanta Pattanaik et al. Frontiers in Plant Science
- The gene regulatory network for breast cancer: integrated regulatory landscape of cancer hallmarks
- (2014) Frank Emmert-Streib et al. Frontiers in Genetics
- Plant Protein Interactomes
- (2013) Pascal Braun et al. Annual Review of Plant Biology
- Autoregressive models for gene regulatory network inference: Sparsity, stability and causality issues
- (2013) George Michailidis et al. MATHEMATICAL BIOSCIENCES
- Unlocking Triticeae genomics to sustainably feed the future
- (2013) K. Mochida et al. PLANT AND CELL PHYSIOLOGY
- Interlocking Feedback Loops Govern the Dynamic Behavior of the Floral Transition in Arabidopsis
- (2013) K. E. Jaeger et al. PLANT CELL
- Digital clocks: simple Boolean models can quantitatively describe circadian systems
- (2012) O. E. Akman et al. Journal of the Royal Society Interface
- Diverse Roles of Strigolactones in Plant Development
- (2012) Philip B. Brewer et al. Molecular Plant
- The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops
- (2012) Alexandra Pokhilko et al. Molecular Systems Biology
- A Synthetic Approach Reveals Extensive Tunability of Auxin Signaling
- (2012) K. A. Havens et al. PLANT PHYSIOLOGY
- Hub-Centered Gene Network Reconstruction Using Automatic Relevance Determination
- (2012) Matthias Böck et al. PLoS One
- The Path from -Carotene to Carlactone, a Strigolactone-Like Plant Hormone
- (2012) A. Alder et al. SCIENCE
- Co-expression and co-responses: within and beyond transcription
- (2012) Takayuki Tohge et al. Frontiers in Plant Science
- Correlation networks visualization
- (2012) Nicholas Provart Frontiers in Plant Science
- A qualitative continuous model of cellular auxin and brassinosteroid signaling and their crosstalk
- (2011) Martial Sankar et al. BIOINFORMATICS
- State Space Model with hidden variables for reconstruction of gene regulatory networks
- (2011) Xi Wu et al. BMC Systems Biology
- The auxin signalling network translates dynamic input into robust patterning at the shoot apex
- (2011) T. Vernoux et al. Molecular Systems Biology
- Enhanced yeast one-hybrid assays for high-throughput gene-centered regulatory network mapping
- (2011) John S Reece-Hoyes et al. NATURE METHODS
- A Data-Driven Integrative Model of Sepal Primordium Polarity in Arabidopsis
- (2011) C. La Rota et al. PLANT CELL
- Brachypodium as a Model for the Grasses: Today and the Future
- (2011) Jelena Brkljacic et al. PLANT PHYSIOLOGY
- Discovering graphical Granger causality using the truncating lasso penalty
- (2010) A. Shojaie et al. BIOINFORMATICS
- ‘Omics’ analyses of regulatory networks in plant abiotic stress responses
- (2010) Kaoru Urano et al. CURRENT OPINION IN PLANT BIOLOGY
- Molecular Basis of the Core Regulatory Network in ABA Responses: Sensing, Signaling and Transport
- (2010) T. Umezawa et al. PLANT AND CELL PHYSIOLOGY
- Research on plant abiotic stress responses in the post-genome era: past, present and future
- (2010) Takashi Hirayama et al. PLANT JOURNAL
- Recursive regularization for inferring gene networks from time-course gene expression profiles
- (2009) Teppei Shimamura et al. BMC Systems Biology
- Computational methods for discovering gene networks from expression data
- (2009) W.-P. Lee et al. BRIEFINGS IN BIOINFORMATICS
- Prediction of Photoperiodic Regulators from Quantitative Gene Circuit Models
- (2009) José Domingo Salazar et al. CELL
- Integrated omics approaches in plant systems biology
- (2009) Atsushi Fukushima et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Omics meet networks—using systems approaches to infer regulatory networks in plants
- (2009) Miguel A Moreno-Risueno et al. CURRENT OPINION IN PLANT BIOLOGY
- The evolution of hierarchical gene regulatory networks
- (2009) Douglas H. Erwin et al. NATURE REVIEWS GENETICS
- Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis
- (2009) T. Umezawa et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Inferring Dynamic Genetic Networks with Low Order Independencies
- (2009) Sophie Lèbre Statistical Applications in Genetics and Molecular Biology
- Erratum: Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation
- (2008) Luis López-Maury et al. NATURE REVIEWS GENETICS
- Modelling and analysis of gene regulatory networks
- (2008) Guy Karlebach et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development
- (2008) Michael F Covington et al. GENOME BIOLOGY
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