Enhanced yeast one-hybrid assays for high-throughput gene-centered regulatory network mapping

Chromosome-Biased Binding and Gene Regulation by the Caenorhabditis elegans DRM Complex

(2011) Tomoko M. Tabuchi et al.   PLoS Genetics

What does biologically meaningful mean? A perspective on gene regulatory network validation

(2011) Albertha JM Walhout   GENOME BIOLOGY

Functional modularity of nuclear hormone receptors in a Caenorhabditis elegans metabolic gene regulatory network

(2010) H Efsun Arda et al.   Molecular Systems Biology

Exhaustive benchmarking of the yeast two-hybrid system

(2010) Yu-Chi Chen et al.   NATURE METHODS

The Genetic Landscape of a Cell

(2010) M. Costanzo et al.   SCIENCE

Gene-centered regulatory networks

(2009) H. E. Arda et al.   Briefings in Functional Genomics

Profiling the Human Protein-DNA Interactome Reveals ERK2 as a Transcriptional Repressor of Interferon Signaling

(2009) Shaohui Hu et al.   CELL

Transcriptional regulation and stabilization of left-right neuronal identity in C. elegans

(2009) B. J. Lesch et al.   GENES & DEVELOPMENT

Large-scale RACE approach for proactive experimental definition of C. elegans ORFeome

(2009) K. Salehi-Ashtiani et al.   GENOME RESEARCH

The C. elegans Snail homolog CES-1 can activate gene expression in vivo and share targets with bHLH transcription factors

(2009) John S. Reece-Hoyes et al.   NUCLEIC ACIDS RESEARCH

Benchmarking yeast two-hybrid systems using the interactions of bacterial motility proteins

(2009) Seesandra Venkatappa Rajagopala et al.   PROTEOMICS

C. elegans pur alpha, an activator of end-1, synergizes with the Wnt pathway to specify endoderm

(2008) Eric S. Witze et al.   DEVELOPMENTAL BIOLOGY

The FLYWCH transcription factors FLH-1, FLH-2, and FLH-3 repress embryonic expression of microRNA genes in C. elegans

(2008) M. C. Ow et al.   GENES & DEVELOPMENT

A C. elegans genome-scale microRNA network contains composite feedback motifs with high flux capacity

(2008) N. J. Martinez et al.   GENES & DEVELOPMENT

An empirical framework for binary interactome mapping

(2008) Kavitha Venkatesan et al.   NATURE METHODS

An experimentally derived confidence score for binary protein-protein interactions

(2008) Pascal Braun et al.   NATURE METHODS