Illumina Sequencing Approach to Characterize Thiamine Metabolism Related Bacteria and the Impacts of Thiamine Supplementation on Ruminal Microbiota in Dairy Cows Fed High-Grain Diets

Thiamine supplementation facilitates thiamine transporter expression in the rumen epithelium and attenuates high-grain-induced inflammation in low-yielding dairy cows

(2017) X.H. Pan et al.   JOURNAL OF DAIRY SCIENCE

Relationship between thiamine and subacute ruminal acidosis induced by a high-grain diet in dairy cows

(2016) X.H. Pan et al.   JOURNAL OF DAIRY SCIENCE

In vitroeffects of sodium bicarbonate buffer on rumen fermentation, levels of lipopolysaccharide and biogenic amine, and composition of rumen microbiota

(2016) Shengyong Mao et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Marked variation between winter and spring gut microbiota in free-ranging Tibetan Macaques (Macaca thibetana)

(2016) Binghua Sun et al.   Scientific Reports

Epimural Indicator Phylotypes of Transiently-Induced Subacute Ruminal Acidosis in Dairy Cattle

(2016) Stefanie U. Wetzels et al.   Frontiers in Microbiology

Insights into Abundant Rumen Ureolytic Bacterial Community Using Rumen Simulation System

(2016) Di Jin et al.   Frontiers in Microbiology

Grain-rich diets altered the colonic fermentation and mucosa-associated bacterial communities and induced mucosal injuries in goats

(2016) Huimin Ye et al.   Scientific Reports

Effects of early feeding on the host rumen transcriptome and bacterial diversity in lambs

(2016) Weimin Wang et al.   Scientific Reports

Using organic acids to control subacute ruminal acidosis and fermentation in feedlot cattle fed a high-grain diet1,2

(2015) D. Vyas et al.   JOURNAL OF ANIMAL SCIENCE

Pyrosequencing reveals shifts in the bacterial epimural community relative to dietary concentrate amount in goats

(2015) S.U. Wetzels et al.   JOURNAL OF DAIRY SCIENCE

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

(2015) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

Effects of different dietary concentrate to forage ratio and thiamine supplementation on the rumen fermentation and ruminal bacterial community in dairy cows

(2015) Hongrong Wang et al.   Animal Production Science

High-grain feeding causes strong shifts in ruminal epithelial bacterial community and expression of Toll-like receptor genes in goats

(2015) Jun-hua Liu et al.   Frontiers in Microbiology

Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes

(2015) Stefanía Magnúsdóttir et al.   Frontiers in Genetics

Identification of genes required for the survival of B. fragilis using massive parallel sequencing of a saturated transposon mutant library

(2014) Yaligara Veeranagouda et al.   BMC GENOMICS

Active dry Saccharomyces cerevisiae can alleviate the effect of subacute ruminal acidosis in lactating dairy cows

(2014) O. AlZahal et al.   JOURNAL OF DAIRY SCIENCE

The gut microbiota, bacterial metabolites and colorectal cancer

(2014) Petra Louis et al.   NATURE REVIEWS MICROBIOLOGY

HemI: A Toolkit for Illustrating Heatmaps

(2014) Wankun Deng et al.   PLoS One

Dynamic microbe and molecule networks in a mouse model of colitis-associated colorectal cancer

(2014) Xujun Liang et al.   Scientific Reports

Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes

(2013) Katherine R Amato et al.   ISME Journal

The Effects of a Probiotic Yeast on the Bacterial Diversity and Population Structure in the Rumen of Cattle

(2013) Eric Pinloche et al.   PLoS One

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Impact of subacute ruminal acidosis (SARA) adaptation and recovery on the density and diversity of bacteria in the rumen of dairy cows

(2011) Sarah E. Hook et al.   FEMS MICROBIOLOGY ECOLOGY

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

The Riboswitch Regulates a Thiamine Pyrophosphate ABC Transporter of the Oral Spirochete Treponema denticola

(2011) J. Bian et al.   JOURNAL OF BACTERIOLOGY

Rumen Microbial Population Dynamics during Adaptation to a High-Grain Diet

(2010) S. C. Fernando et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The effects of thiamine inhibition on ruminal fermentation: a preliminary study

(2010) E. M. Ungerfeld et al.   FOLIA MICROBIOLOGICA

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Rumen Microbiome Composition Determined Using Two Nutritional Models of Subacute Ruminal Acidosis

(2009) E. Khafipour et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A grain-based subacute ruminal acidosis challenge causes translocation of lipopolysaccharide and triggers inflammation

(2009) E. Khafipour et al.   JOURNAL OF DAIRY SCIENCE