Grain-rich diets altered the colonic fermentation and mucosa-associated bacterial communities and induced mucosal injuries in goats

Interactions between Gut Microbiota, Host Genetics and Diet Modulate the Predisposition to Obesity and Metabolic Syndrome

(2015) Siegfried Ussar et al.   Cell Metabolism

Monitoring host responses to the gut microbiota

(2015) Joshua S Lichtman et al.   ISME Journal

Pyrosequencing reveals shifts in the bacterial epimural community relative to dietary concentrate amount in goats

(2015) S.U. Wetzels et al.   JOURNAL OF DAIRY SCIENCE

Taxonomic Identification of Commensal Bacteria Associated with the Mucosa and Digesta throughout the Gastrointestinal Tracts of Preweaned Calves

(2014) Nilusha Malmuthuge et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

High-grain feeding alters caecal bacterial microbiota composition and fermentation and results in caecal mucosal injury in goats

(2014) Junhua Liu et al.   BRITISH JOURNAL OF NUTRITION

Relationship of severity of subacute ruminal acidosis to rumen fermentation, chewing activities, sorting behavior, and milk production in lactating dairy cows fed a high-grain diet

(2014) X. Gao et al.   JOURNAL OF DAIRY SCIENCE

HemI: A Toolkit for Illustrating Heatmaps

(2014) Wankun Deng et al.   PLoS One

A high-grain diet alters the omasal epithelial structure and expression of tight junction proteins in a goat model

(2014) Jun-hua Liu et al.   VETERINARY JOURNAL

A high-grain diet causes massive disruption of ruminal epithelial tight junctions in goats

(2013) Jun-hua Liu et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Grain-rich diets differently alter ruminal and colonic abundance of microbial populations and lipopolysaccharide in goats

(2013) Barbara U. Metzler-Zebeli et al.   ANAEROBE

Exploring host-microbiota interactions in animal models and humans

(2013) A. D. Kostic et al.   GENES & DEVELOPMENT

Epithelial response to high-grain diets involves alteration in nutrient transporters and Na+/K+-ATPase mRNA expression in rumen and colon of goats1

(2013) B. U. Metzler-Zebeli et al.   JOURNAL OF ANIMAL SCIENCE

Effects of subacute ruminal acidosis challenges on fermentation and biogenic amines in the rumen of dairy cows

(2013) D.S. Wang et al.   Livestock Science

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Downregulation of Cellular Protective Factors of Rumen Epithelium in Goats Fed High Energy Diet

(2013) Manfred Hollmann et al.   PLoS One

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Quantifying the effect of monensin dose on the rumen volatile fatty acid profile in high-grain-fed beef cattle1

(2012) J. L. Ellis et al.   JOURNAL OF ANIMAL SCIENCE

Bovine rumen epithelium undergoes rapid structural adaptations during grain-induced subacute ruminal acidosis

(2011) Michael A. Steele et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

NLRP6 Inflammasome Regulates Colonic Microbial Ecology and Risk for Colitis

(2011) Eran Elinav et al.   CELL

Effects of abomasal oligofructose on blood and feces of Holstein steers

(2011) S. R. Mainardi et al.   JOURNAL OF ANIMAL SCIENCE

RUMINANT NUTRITION SYMPOSIUM: Productivity, digestion, and health responses to hindgut acidosis in ruminants1

(2011) T. F. Gressley et al.   JOURNAL OF ANIMAL SCIENCE

Effects of subacute ruminal acidosis challenges on fermentation and endotoxins in the rumen and hindgut of dairy cows

(2011) S. Li et al.   JOURNAL OF DAIRY SCIENCE

The role of protective and probiotic cultures in food and feed and their impact in food safety

(2011) Francesca Gaggia et al.   TRENDS IN FOOD SCIENCE & TECHNOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

The effect of nutrient deposition on bacterial communities in Arctic tundra soil

(2010) Barbara J. Campbell et al.   ENVIRONMENTAL MICROBIOLOGY

A Pyrosequencing Study in Twins Shows That Gastrointestinal Microbial Profiles Vary With Inflammatory Bowel Disease Phenotypes

(2010) Ben P. Willing et al.   GASTROENTEROLOGY

Mechanisms of Microbial Hydrogen Disposal in the Human Colon and Implications for Health and Disease

(2010) Noriko Nakamura et al.   Annual Review of Food Science and Technology

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

A grain-based subacute ruminal acidosis challenge causes translocation of lipopolysaccharide and triggers inflammation

(2009) E. Khafipour et al.   JOURNAL OF DAIRY SCIENCE

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Subacute ruminal acidosis in dairy cows: The physiological causes, incidence and consequences

(2008) J.C. Plaizier et al.   VETERINARY JOURNAL

Effect of disodium fumarate on ruminal metabolism and rumen bacterial communities as revealed by denaturing gradient gel electrophoresis analysis of 16S ribosomal DNA

(2007) S.Y. Mao et al.   ANIMAL FEED SCIENCE AND TECHNOLOGY