The Glycolytic Versatility of Bacteroides uniformis CECT 7771 and Its Genome Response to Oligo and Polysaccharides

The Microbiome-Gut-Brain Axis in Health and Disease

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Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Feeding the microbiota-gut-brain axis: diet, microbiome, and neuropsychiatry

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A fibrolytic potential in the human ileum mucosal microbiota revealed by functional metagenomic

(2017) Orlane Patrascu et al.   Scientific Reports

Butyrate, neuroepigenetics and the gut microbiome: Can a high fiber diet improve brain health?

(2016) Megan W. Bourassa et al.   NEUROSCIENCE LETTERS

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(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Safety Assessment of Bacteroides uniformis CECT 7771 Isolated from Stools of Healthy Breast-Fed Infants

(2016) M. Leonor Fernández-Murga et al.   PLoS One

Impact of dietary fiber and fat on gut microbiota re-modeling and metabolic health

(2016) Alfonso Benítez-Páez et al.   TRENDS IN FOOD SCIENCE & TECHNOLOGY

Genome Structure of the Symbiont Bifidobacterium pseudocatenulatum CECT 7765 and Gene Expression Profiling in Response to Lactulose-Derived Oligosaccharides

(2016) Alfonso Benítez-Páez et al.   Frontiers in Microbiology

The Neuro-endocrinological Role of Microbial Glutamate and GABA Signaling

(2016) Roberto Mazzoli et al.   Frontiers in Microbiology

Unusual sub-genus associations of faecal Prevotella and Bacteroides with specific dietary patterns

(2016) Francesca De Filippis et al.   Microbiome

VFDB 2016: hierarchical and refined dataset for big data analysis—10 years on

(2015) Lihong Chen et al.   NUCLEIC ACIDS RESEARCH

ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap

(2015) Tauno Metsalu et al.   NUCLEIC ACIDS RESEARCH

Butyrate modulates bacterial adherence on LS174T human colorectal cells by stimulating mucin secretion and MAPK signaling pathway

(2015) Tae-Hwan Jung et al.   Nutrition Research and Practice

A Complete Pathway Model for Lipid A Biosynthesis in Escherichia coli

(2015) Akintunde Emiola et al.   PLoS One

Biomass Utilization by Gut Microbiomes

(2014) Bryan A. White et al.   Annual Review of Microbiology

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An integrated catalog of reference genes in the human gut microbiome

(2014) Junhua Li et al.   NATURE BIOTECHNOLOGY

SMART: recent updates, new developments and status in 2015

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Hundreds of Circular Novel Plasmids and DNA Elements Identified in a Rat Cecum Metamobilome

(2014) Tue Sparholt Jørgensen et al.   PLoS One

Diet, microbiota, and microbial metabolites in colon cancer risk in rural Africans and African Americans

(2013) Junhai Ou et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

The Genotypic View of Social Interactions in Microbial Communities

(2013) Sara Mitri et al.   Annual Review of Genetics

Association of dietary type with fecal microbiota in vegetarians and omnivores in Slovenia

(2013) Bojana Bogovič Matijašić et al.   EUROPEAN JOURNAL OF NUTRITION

Chasing acyl carrier protein through a catalytic cycle of lipid A production

(2013) Ali Masoudi et al.   NATURE

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacteroides cellulosilyticus WH2, a Symbiont with an Extensive Glycobiome

(2013) Nathan P. McNulty et al.   PLOS BIOLOGY

GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data

(2012) Jianxing Feng et al.   BIOINFORMATICS

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(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Human gut microbiome viewed across age and geography

(2012) Tanya Yatsunenko et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Bacteroides uniformis CECT 7771 Ameliorates Metabolic and Immunological Dysfunction in Mice with High-Fat-Diet Induced Obesity

(2012) Paola Gauffin Cano et al.   PLoS One

Influence of Environmental and Genetic Factors Linked to Celiac Disease Risk on Infant Gut Colonization by Bacteroides Species

(2011) Ester Sánchez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

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(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

Bacterial biogeography of the human digestive tract

(2011) Jennifer C. Stearns et al.   Scientific Reports

Prodigal: prokaryotic gene recognition and translation initiation site identification

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Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes

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CAZymes Analysis Toolkit (CAT): Web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database

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A human gut microbial gene catalogue established by metagenomic sequencing

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progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

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Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

(2010) C. De Filippo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Succession of microbial consortia in the developing infant gut microbiome

(2010) J. E. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Complex Glycan Catabolism by the Human Gut Microbiota: The Bacteroidetes Sus-like Paradigm

(2009) Eric C. Martens et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biological effects of gum arabic: A review of some recent research

(2008) Badreldin H. Ali et al.   FOOD AND CHEMICAL TOXICOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

ARDB--Antibiotic Resistance Genes Database

(2008) B. Liu et al.   NUCLEIC ACIDS RESEARCH